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云南省腹泻患儿中分离的 DH13M98 , 的遗传学特征。

Genetic Characterization of DH13M98, , Isolated from in Yunnan Province, China.

机构信息

Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, China.

出版信息

Vector Borne Zoonotic Dis. 2023 Jan;23(1):35-43. doi: 10.1089/vbz.2022.0031. Epub 2023 Jan 2.

Abstract

In August 2013, a virus strain (DH13M98) was isolated from collected in Mangshi, the southwestern border area of Yunnan Province, China. The virus replicated and caused cytopathic effects (CPE) in (C6/36) cells, but not in baby hamster Syrian kidney (BHK-21) cells. Agarose gel electrophoresis (AGE) analysis revealed that the DH13M98 virus was a 10-segment double-stranded RNA (dsRNA) virus, with a "1-1-1-2-1-1-2-1" pattern. The full genome of the DH13M98 virus was sequenced by full-length amplification of complementary DNAs (FLAC). Phylogenetic analysis of the viral RNA-dependent RNA polymerase (Pol), major subcore-shell (T2), and major core-surface (T13) protein showed that DH13M98 clustered with (UMAV), and the amino acid (aa) sequences of DH13M98 shared more than 89.5% (Pol), 95% (T2), and 91.1% (T13) identity with UMAV. However, the aa identity of outer capsid protein one (OC1) of DH13M98 with other UMAV was 57.1-79.2%, suggesting that DH13M98 was UMAV, but distinct from other strains of UMAV from the United States, Japan, and Germany at OC1, and it may be a high variant strain of UMAV, even a new serotype. This is the first isolation of UMAV in China, which enriches the resources of virus species in China and provides new insights into the genetic diversity and geographical distribution of the virus.

摘要

2013 年 8 月,从中国云南省西南部边境芒市采集的样本中分离到一株病毒株(DH13M98)。该病毒在(C6/36)细胞中复制并引起细胞病变效应(CPE),但不在幼仓鼠肾细胞(BHK-21)中复制。琼脂糖凝胶电泳(AGE)分析显示,DH13M98 病毒是一种 10 节双链 RNA(dsRNA)病毒,具有“1-1-1-2-1-1-2-1”模式。DH13M98 病毒的全长基因组通过互补 DNA(FLAC)的全长扩增进行测序。病毒 RNA 依赖性 RNA 聚合酶(Pol)、主要亚核壳(T2)和主要核心表面(T13)蛋白的系统进化分析表明,DH13M98 与 UMAV 聚类,DH13M98 的氨基酸(aa)序列与 UMAV 的 Pol 共享超过 89.5%、T2 共享 95%、T13 共享 91.1%的同源性。然而,DH13M98 的外壳蛋白 1(OC1)与其他 UMAV 的 aa 同一性为 57.1-79.2%,表明 DH13M98 是 UMAV,但与来自美国、日本和德国的其他 UMAV 株在 OC1 处不同,它可能是 UMAV 的高变异株,甚至是一种新的血清型。这是中国首次分离到 UMAV,丰富了中国病毒物种资源,为病毒的遗传多样性和地理分布提供了新的见解。

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