Systems Biology Ireland, School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland.
Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland.
Biochem J. 2023 Jan 13;480(1):1-23. doi: 10.1042/BCJ20220234.
RAS proteins regulate most aspects of cellular physiology. They are mutated in 30% of human cancers and 4% of developmental disorders termed Rasopathies. They cycle between active GTP-bound and inactive GDP-bound states. When active, they can interact with a wide range of effectors that control fundamental biochemical and biological processes. Emerging evidence suggests that RAS proteins are not simple on/off switches but sophisticated information processing devices that compute cell fate decisions by integrating external and internal cues. A critical component of this compute function is the dynamic regulation of RAS activation and downstream signaling that allows RAS to produce a rich and nuanced spectrum of biological outputs. We discuss recent findings how the dynamics of RAS and its downstream signaling is regulated. Starting from the structural and biochemical properties of wild-type and mutant RAS proteins and their activation cycle, we examine higher molecular assemblies, effector interactions and downstream signaling outputs, all under the aspect of dynamic regulation. We also consider how computational and mathematical modeling approaches contribute to analyze and understand the pleiotropic functions of RAS in health and disease.
RAS 蛋白调节细胞生理的大多数方面。它们在 30%的人类癌症和 4%的发育障碍中发生突变,称为 Ras 病。它们在活性 GTP 结合和非活性 GDP 结合状态之间循环。当处于活性状态时,它们可以与广泛的效应物相互作用,这些效应物控制基本的生化和生物学过程。新出现的证据表明,RAS 蛋白不是简单的开/关开关,而是复杂的信息处理设备,通过整合外部和内部线索来计算细胞命运决定。这种计算功能的一个关键组成部分是 RAS 激活和下游信号的动态调节,这使得 RAS 能够产生丰富而微妙的生物学输出谱。我们讨论了最近的发现,即 RAS 及其下游信号的动态如何受到调节。从野生型和突变型 RAS 蛋白的结构和生化特性及其激活循环开始,我们研究了更高的分子组装、效应物相互作用和下游信号输出,所有这些都在动态调节的方面进行了研究。我们还考虑了计算和数学建模方法如何有助于分析和理解 RAS 在健康和疾病中的多效性功能。