Suppr超能文献

杨树木耳 NAC 转录因子的全基因组鉴定和进化扩张及其在干旱下的组织特异性表达谱。

Genome-Wide Characterization and Evolutionary Expansion of Poplar NAC Transcription Factors and Their Tissue-Specific Expression Profiles under Drought.

机构信息

College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China.

Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education of China, Co-Innovation Center for the Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.

出版信息

Int J Mol Sci. 2022 Dec 23;24(1):253. doi: 10.3390/ijms24010253.

Abstract

The NAC (NAM, ATAF1/2 and CUC2) is a large gene family of plant-specific transcription factors that play a pivotal role in various physiological processes and abiotic stresses. Due to the lack of genome-wide characterization, intraspecific and interspecific synteny, and drought-responsive expression pattern of genes in poplar, the functional characterization of drought-related genes have been scarcely reported in species. Here, we identified a total of 170 domain-containing genes in the genome, 169 of which were unevenly distributed on its nineteen chromosomes. These genes were phylogenetically divided into twenty subgroups, some of which exhibited a similar pattern of exon-intron architecture. The synteny and Ka/Ks analysis indicated that the expansion of genes in poplar was mainly due to gene duplication events occurring before and after the divergence of and . Ten ( cv.'Nanlin895') genes were randomly selected and cloned. Their drought-responsive expression profiles showed a tissue-specific pattern. The transcription factor PdNAC013 was verified to be localized in the nucleus. Our research results provide genomic information for the expansion of genes in the poplar genome, and for further characterizing putative poplar genes associated with water-deficit.

摘要

NAC(NAM、ATAF1/2 和 CUC2)是一个大型的植物特异性转录因子基因家族,在各种生理过程和非生物胁迫中发挥着关键作用。由于杨树基因组中缺乏全基因组特征、种内和种间同线性以及干旱响应表达模式的研究,因此在杨树种内,与干旱相关的 NAC 基因的功能特征研究报道甚少。在这里,我们在 基因组中总共鉴定到了 170 个含有 结构域的基因,其中 169 个不均匀地分布在其 19 条染色体上。这些基因在系统发育上被分为二十个亚组,其中一些亚组表现出相似的外显子-内含子结构模式。同线性和 Ka/Ks 分析表明,杨树中 基因的扩张主要是由于在杨树和柳树分化之前和之后发生的基因复制事件所致。我们随机选择并克隆了 10 个 (cv. 'Nanlin895')基因。它们的干旱响应表达谱表现出组织特异性模式。转录因子 PdNAC013 被证实定位于细胞核中。我们的研究结果为杨树基因组中 基因的扩张以及进一步鉴定与水分亏缺相关的潜在杨树 基因提供了基因组信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/486e/9820422/31357a8cece5/ijms-24-00253-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验