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GBCdb:胆囊癌中的 RNA 表达图谱和 ncRNA-mRNA 相互作用。

GBCdb: RNA expression landscapes and ncRNA-mRNA interactions in gallbladder carcinoma.

机构信息

Department of Bioinformatics, Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province, School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China.

Jiangsu Key Laboratory for Molecular and Medical Biotechnology, School of Life Science, Nanjing Normal University, Nanjing, 210023, China.

出版信息

BMC Bioinformatics. 2023 Jan 9;24(1):12. doi: 10.1186/s12859-023-05133-2.

Abstract

Gallbladder carcinoma (GBC), an aggressive malignant tumor of the biliary system, is characterized by high cellular heterogeneity and poor prognosis. Fewer data have been reported in GBC than other common cancer types. Multi-omics data will contribute to the understanding of the molecular mechanisms of cancer, cancer diagnosis and prognosis. Herein, to provide better understanding of the molecular events in GBC pathogenesis, we developed GBCdb ( http://tmliang.cn/gbc/ ), a user-friendly interface for the query and browsing of GBC-associated genes and RNA interaction networks using published multi-omics data, which also included experimentally supported data from different molecular levels. GBCdb will help to elucidate the potential biological roles of different RNAs and allow for the exploration of RNA interactions in GBC. These resources will provide an opportunity for unraveling the potential molecular features of Gallbladder carcinoma.

摘要

胆囊癌(GBC)是一种侵袭性的胆道恶性肿瘤,其特征是细胞异质性高,预后差。与其他常见癌症类型相比,GBC 的数据报道较少。多组学数据将有助于理解癌症的分子机制、癌症诊断和预后。在这里,为了更好地了解 GBC 发病机制中的分子事件,我们开发了 GBCdb(http://tmliang.cn/gbc/),这是一个用户友好的界面,可使用发表的多组学数据查询和浏览与 GBC 相关的基因和 RNA 相互作用网络,其中还包括来自不同分子水平的实验支持数据。GBCdb 将有助于阐明不同 RNA 的潜在生物学作用,并允许探索 GBC 中的 RNA 相互作用。这些资源将为揭示胆囊癌的潜在分子特征提供机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6221/9830852/9d2421cec1ba/12859_2023_5133_Fig1_HTML.jpg

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