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基于深度学习和影像组学特征的融合集成分类器用于囊性肾病变恶性风险预测

Deep learning and radiomic feature-based blending ensemble classifier for malignancy risk prediction in cystic renal lesions.

作者信息

He Quan-Hao, Feng Jia-Jun, Lv Fa-Jin, Jiang Qing, Xiao Ming-Zhao

机构信息

Department of Urology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, People's Republic of China.

Department of Medical Imaging, Guangzhou First People's Hospital, School of Medicine, South China University of Technology, Guangzhou, 51000, People's Republic of China.

出版信息

Insights Imaging. 2023 Jan 11;14(1):6. doi: 10.1186/s13244-022-01349-7.

Abstract

BACKGROUND

The rising prevalence of cystic renal lesions (CRLs) detected by computed tomography necessitates better identification of the malignant cystic renal neoplasms since a significant majority of CRLs are benign renal cysts. Using arterial phase CT scans combined with pathology diagnosis results, a fusion feature-based blending ensemble machine learning model was created to identify malignant renal neoplasms from cystic renal lesions (CRLs). Histopathology results were adopted as diagnosis standard. Pretrained 3D-ResNet50 network was selected for non-handcrafted features extraction and pyradiomics toolbox was selected for handcrafted features extraction. Tenfold cross validated least absolute shrinkage and selection operator regression methods were selected to identify the most discriminative candidate features in the development cohort. Feature's reproducibility was evaluated by intra-class correlation coefficients and inter-class correlation coefficients. Pearson correlation coefficients for normal distribution and Spearman's rank correlation coefficients for non-normal distribution were utilized to remove redundant features. After that, a blending ensemble machine learning model were developed in training cohort. Area under the receiver operator characteristic curve (AUC), accuracy score (ACC), and decision curve analysis (DCA) were employed to evaluate the performance of the final model in testing cohort.

RESULTS

The fusion feature-based machine learning algorithm demonstrated excellent diagnostic performance in external validation dataset (AUC = 0.934, ACC = 0.905). Net benefits presented by DCA are higher than Bosniak-2019 version classification for stratifying patients with CRL to the appropriate surgery procedure.

CONCLUSIONS

Fusion feature-based classifier accurately distinguished malignant and benign CRLs which outperformed the Bosniak-2019 version classification and illustrated improved clinical decision-making utility.

摘要

背景

计算机断层扫描检测到的囊性肾病变(CRL)患病率不断上升,由于绝大多数CRL是良性肾囊肿,因此需要更好地识别恶性囊性肾肿瘤。结合动脉期CT扫描和病理诊断结果,创建了一种基于融合特征的混合集成机器学习模型,以从囊性肾病变(CRL)中识别恶性肾肿瘤。采用组织病理学结果作为诊断标准。选择预训练的3D-ResNet50网络进行非手工特征提取,选择pyradiomics工具箱进行手工特征提取。选择十折交叉验证的最小绝对收缩和选择算子回归方法,以识别开发队列中最具鉴别力的候选特征。通过类内相关系数和类间相关系数评估特征的可重复性。利用正态分布的Pearson相关系数和非正态分布的Spearman秩相关系数去除冗余特征。之后,在训练队列中开发了一种混合集成机器学习模型。采用受试者操作特征曲线下面积(AUC)、准确率得分(ACC)和决策曲线分析(DCA)来评估最终模型在测试队列中的性能。

结果

基于融合特征的机器学习算法在外部验证数据集中表现出优异的诊断性能(AUC = 0.934,ACC = 0.905)。DCA呈现的净效益高于Bosniak-2019版分类,可将CRL患者分层到合适的手术程序。

结论

基于融合特征的分类器能够准确区分恶性和良性CRL,其性能优于Bosniak-2019版分类,并显示出改善的临床决策效用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/924b/9834471/1d2bab25702b/13244_2022_1349_Fig1_HTML.jpg

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