• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

OOCDB:一个全面、系统和实时的器官芯片数据库。

OOCDB: A Comprehensive, Systematic, and Real-time Organs-on-a-chip Database.

机构信息

School of Life Science and Technology, Southeast University, Nanjing 210096, China.

School of Biological Science & Medical Engineering, Southeast University, Nanjing 210096, China.

出版信息

Genomics Proteomics Bioinformatics. 2023 Apr;21(2):243-258. doi: 10.1016/j.gpb.2023.01.001. Epub 2023 Jan 12.

DOI:10.1016/j.gpb.2023.01.001
PMID:36640825
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10626057/
Abstract

Organs-on-a-chip is a microfluidic microphysiological system that uses microfluidic technology to analyze the structure and function of living human cells at the tissue and organ levels in vitro. Organs-on-a-chip technology, as opposed to traditional two-dimensional cell culture and animal models, can more closely simulate pathologic and toxicologic interactions between different organs or tissues and reflect the collaborative response of multiple organs to drugs. Despite the fact that many organs-on-a-chip-related data have been published, none of the current databases have all of the following functions: searching, downloading, as well as analyzing data and results from the literature on organs-on-a-chip. Therefore, we created an organs-on-a-chip database (OOCDB) as a platform to integrate information about organs-on-a-chip from various sources, including literature, patents, raw data from microarray and transcriptome sequencing, several open-access datasets of organs-on-a-chip and organoids, and data generated in our laboratory. OOCDB contains dozens of sub-databases and analysis tools, and each sub-database contains various data associated with organs-on-a-chip, with the goal of providing researchers with a comprehensive, systematic, and convenient search engine. Furthermore, it offers a variety of other functions, such as mathematical modeling, three-dimensional modeling, and citation mapping, to meet the needs of researchers and promote the development of organs-on-a-chip. The OOCDB is available at http://www.organchip.cn.

摘要

器官芯片是一种微流控微生理系统,利用微流控技术在体外分析活的人体细胞在组织和器官水平的结构和功能。与传统的二维细胞培养和动物模型相比,器官芯片技术可以更紧密地模拟不同器官或组织之间的病理和毒理相互作用,并反映多个器官对药物的协同反应。尽管已经发表了许多与器官芯片相关的数据,但目前没有一个数据库具有以下所有功能:搜索、下载以及分析文献中关于器官芯片的数据和结果。因此,我们创建了一个器官芯片数据库 (OOCDB),作为一个平台来整合来自各种来源的器官芯片信息,包括文献、专利、微阵列和转录组测序的原始数据、几个公开获取的器官芯片和类器官数据集,以及我们实验室生成的数据。OOCDB 包含几十个子数据库和分析工具,每个子数据库都包含与器官芯片相关的各种数据,旨在为研究人员提供一个全面、系统、方便的搜索引擎。此外,它还提供了数学建模、三维建模和引文映射等多种功能,以满足研究人员的需求,促进器官芯片的发展。OOCDB 可在 http://www.organchip.cn 上获得。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/2adf0b111145/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/e77c045767aa/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/436864691200/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/24511c401c7f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/a9d159dd6706/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/3c901d50cbd5/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/fdca46b40c98/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/6bfc4905e664/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/dfefc78fd483/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/2adf0b111145/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/e77c045767aa/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/436864691200/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/24511c401c7f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/a9d159dd6706/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/3c901d50cbd5/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/fdca46b40c98/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/6bfc4905e664/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/dfefc78fd483/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d047/10626057/2adf0b111145/gr9.jpg

相似文献

1
OOCDB: A Comprehensive, Systematic, and Real-time Organs-on-a-chip Database.OOCDB:一个全面、系统和实时的器官芯片数据库。
Genomics Proteomics Bioinformatics. 2023 Apr;21(2):243-258. doi: 10.1016/j.gpb.2023.01.001. Epub 2023 Jan 12.
2
Organ-On-A-Chip Database Revealed-Achieving the Human Avatar in Silicon.器官芯片数据库揭秘——在硅片中实现人体化身
Bioengineering (Basel). 2022 Nov 12;9(11):685. doi: 10.3390/bioengineering9110685.
3
Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.在流行地区,服用抗叶酸抗疟药物的人群中,叶酸补充剂与疟疾易感性和严重程度的关系。
Cochrane Database Syst Rev. 2022 Feb 1;2(2022):CD014217. doi: 10.1002/14651858.CD014217.
4
Review: 3D cell models for organ-on-a-chip applications.综述:用于器官芯片应用的 3D 细胞模型。
Anal Chim Acta. 2024 May 1;1301:342413. doi: 10.1016/j.aca.2024.342413. Epub 2024 Feb 28.
5
Organ Chips and Visualization of Biological Systems.器官芯片与生物系统可视化。
Adv Exp Med Biol. 2023;1199:155-183. doi: 10.1007/978-981-32-9902-3_8.
6
biosensing technologies for an organ-on-a-chip.用于芯片上器官的生物传感技术。
Biofabrication. 2023 Aug 17;15(4). doi: 10.1088/1758-5090/aceaae.
7
3D cell culture models and organ-on-a-chip: Meet separation science and mass spectrometry.3D 细胞培养模型和器官芯片:迎接分离科学和质谱分析。
Electrophoresis. 2020 Jan;41(1-2):56-64. doi: 10.1002/elps.201900170. Epub 2019 Sep 30.
8
Organs-on-chips technologies - A guide from disease models to opportunities for drug development.器官芯片技术——从疾病模型到药物开发机遇的指南。
Biosens Bioelectron. 2023 Jul 1;231:115271. doi: 10.1016/j.bios.2023.115271. Epub 2023 Mar 31.
9
Microfluidic organoids-on-a-chip: The future of human models.微流控芯片上的类器官:人类模型的未来。
Semin Cell Dev Biol. 2023 Jul 30;144:41-54. doi: 10.1016/j.semcdb.2022.10.001. Epub 2022 Oct 11.
10
Biosensors integrated 3D organoid/organ-on-a-chip system: A real-time biomechanical, biophysical, and biochemical monitoring and characterization.生物传感器集成的 3D 类器官/器官芯片系统:实时生物力学、生物物理和生物化学监测和表征。
Biosens Bioelectron. 2023 Jul 1;231:115285. doi: 10.1016/j.bios.2023.115285. Epub 2023 Apr 7.

引用本文的文献

1
Establishment of a chemoresistant laryngeal cancer cell model to study chemoresistance and chemosensitization responses via transcriptomic analysis and a tumor-on-a-chip platform.通过转录组分析和芯片肿瘤平台建立化疗耐药喉癌细胞模型以研究化疗耐药性和化疗增敏反应。
Bioeng Transl Med. 2025 Jan 22;10(3):e10741. doi: 10.1002/btm2.10741. eCollection 2025 May.
2
Integrative proteomic and metabolomic elucidation of cardiomyopathy with in vivo and in vitro models and clinical samples.整合蛋白质组学和代谢组学阐明心肌病的体内和体外模型及临床样本。
Mol Ther. 2024 Oct 2;32(10):3288-3312. doi: 10.1016/j.ymthe.2024.08.030. Epub 2024 Sep 3.
3

本文引用的文献

1
Comparative Toxicogenomics Database (CTD): update 2023.比较毒理学基因组数据库(CTD):2023 年更新。
Nucleic Acids Res. 2023 Jan 6;51(D1):D1257-D1262. doi: 10.1093/nar/gkac833.
2
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.基因组序列档案家族:走向爆炸式的数据增长和多样化的数据类型。
Genomics Proteomics Bioinformatics. 2021 Aug;19(4):578-583. doi: 10.1016/j.gpb.2021.08.001. Epub 2021 Aug 13.
3
Organoids and organ chips in ophthalmology.眼科学中的类器官和器官芯片。
Organ-On-A-Chip Database Revealed-Achieving the Human Avatar in Silicon.
器官芯片数据库揭秘——在硅片中实现人体化身
Bioengineering (Basel). 2022 Nov 12;9(11):685. doi: 10.3390/bioengineering9110685.
Ocul Surf. 2021 Jan;19:1-15. doi: 10.1016/j.jtos.2020.11.004. Epub 2020 Nov 18.
4
PubChem in 2021: new data content and improved web interfaces.PubChem 在 2021 年:新增数据内容和改进的网络界面。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1388-D1395. doi: 10.1093/nar/gkaa971.
5
Organ-on-a-chip platforms for accelerating the evaluation of nanomedicine.用于加速纳米药物评估的芯片器官平台。
Bioact Mater. 2020 Oct 12;6(4):1012-1027. doi: 10.1016/j.bioactmat.2020.09.022. eCollection 2021 Apr.
6
Integrated human organ-on-a-chip model for predictive studies of anti-tumor drug efficacy and cardiac safety.用于抗肿瘤药物疗效和心脏安全性预测研究的集成式人源器官芯片模型。
Lab Chip. 2020 Nov 24;20(23):4357-4372. doi: 10.1039/d0lc00424c.
7
Organ-on-a-Chip.器官芯片。
Adv Biochem Eng Biotechnol. 2022;179:311-342. doi: 10.1007/10_2020_135.
8
Organs-on-chips: into the next decade.芯片器官:迈向新的十年。
Nat Rev Drug Discov. 2021 May;20(5):345-361. doi: 10.1038/s41573-020-0079-3. Epub 2020 Sep 10.
9
NCBI Taxonomy: a comprehensive update on curation, resources and tools.NCBI 分类学:在管理、资源和工具方面的全面更新。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa062.
10
Multiplexed blood-brain barrier organ-on-chip.多重血脑屏障芯片器官
Lab Chip. 2020 Aug 26;20(17):3132-3143. doi: 10.1039/d0lc00399a.