School of Life Science and Technology, Southeast University, Nanjing 210096, China.
School of Biological Science & Medical Engineering, Southeast University, Nanjing 210096, China.
Genomics Proteomics Bioinformatics. 2023 Apr;21(2):243-258. doi: 10.1016/j.gpb.2023.01.001. Epub 2023 Jan 12.
Organs-on-a-chip is a microfluidic microphysiological system that uses microfluidic technology to analyze the structure and function of living human cells at the tissue and organ levels in vitro. Organs-on-a-chip technology, as opposed to traditional two-dimensional cell culture and animal models, can more closely simulate pathologic and toxicologic interactions between different organs or tissues and reflect the collaborative response of multiple organs to drugs. Despite the fact that many organs-on-a-chip-related data have been published, none of the current databases have all of the following functions: searching, downloading, as well as analyzing data and results from the literature on organs-on-a-chip. Therefore, we created an organs-on-a-chip database (OOCDB) as a platform to integrate information about organs-on-a-chip from various sources, including literature, patents, raw data from microarray and transcriptome sequencing, several open-access datasets of organs-on-a-chip and organoids, and data generated in our laboratory. OOCDB contains dozens of sub-databases and analysis tools, and each sub-database contains various data associated with organs-on-a-chip, with the goal of providing researchers with a comprehensive, systematic, and convenient search engine. Furthermore, it offers a variety of other functions, such as mathematical modeling, three-dimensional modeling, and citation mapping, to meet the needs of researchers and promote the development of organs-on-a-chip. The OOCDB is available at http://www.organchip.cn.
器官芯片是一种微流控微生理系统,利用微流控技术在体外分析活的人体细胞在组织和器官水平的结构和功能。与传统的二维细胞培养和动物模型相比,器官芯片技术可以更紧密地模拟不同器官或组织之间的病理和毒理相互作用,并反映多个器官对药物的协同反应。尽管已经发表了许多与器官芯片相关的数据,但目前没有一个数据库具有以下所有功能:搜索、下载以及分析文献中关于器官芯片的数据和结果。因此,我们创建了一个器官芯片数据库 (OOCDB),作为一个平台来整合来自各种来源的器官芯片信息,包括文献、专利、微阵列和转录组测序的原始数据、几个公开获取的器官芯片和类器官数据集,以及我们实验室生成的数据。OOCDB 包含几十个子数据库和分析工具,每个子数据库都包含与器官芯片相关的各种数据,旨在为研究人员提供一个全面、系统、方便的搜索引擎。此外,它还提供了数学建模、三维建模和引文映射等多种功能,以满足研究人员的需求,促进器官芯片的发展。OOCDB 可在 http://www.organchip.cn 上获得。