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发育与疾病中的RNA去腺苷酸化复合体

RNA deadenylation complexes in development and diseases.

作者信息

Liu Yilin, Ramkumar Niveditha, Vu Ly P

机构信息

Terry Fox Laboratory, British Columbia Cancer Research Centre, Vancouver, BC, Canada.

Faculty of Medicine, Department of Experimental Medicine, University of British Columbia, Vancouver, BC, Canada.

出版信息

Biochem Cell Biol. 2023 Apr 1;101(2):131-147. doi: 10.1139/bcb-2022-0325. Epub 2023 Jan 16.

DOI:10.1139/bcb-2022-0325
PMID:36645883
Abstract

RNA deadenylation, the process of shortening of the 3' poly(A) tail of an RNA molecule, is one of the key steps of post-transcriptional regulation of gene expression in eukaryotic cells. PAN2/3 and CCR4-NOT (CNOT) are the two dominant RNA deadenylation complexes, which play central roles in mediating mRNA decay and translation. While degradation is the final fate of virtually all RNAs in their life cycles, selection of RNA targets as well as control of the rate and timing of RNA decay, in coordination with other molecular pathways, including translation, can be modulated in certain contexts. Such regulation influences cell growth, proliferation, and differentiation at the cellular level; and contributes to establish polarity and regulate signaling at the tissue level. Dysregulation of deadenylation processes have also been implicated in human diseases ranging from cardiac diseases and neurodevelopmental disorders to cancers. In this review, we will discuss mechanisms of gene expression control mediated by the RNA deadenylation complexes and highlight relevant evidence supporting the emerging roles of RNA deadenylation and its regulatory proteins during development and in diseases. A systemic understanding of these mechanisms will be a critical foundation for development of effective strategies to therapeutically target them.

摘要

RNA去腺苷酸化是指RNA分子3'端多聚腺苷酸尾巴缩短的过程,是真核细胞基因表达转录后调控的关键步骤之一。PAN2/3和CCR4-NOT(CNOT)是两种主要的RNA去腺苷酸化复合体,在介导mRNA降解和翻译过程中发挥核心作用。虽然降解实际上是所有RNA在其生命周期中的最终归宿,但在某些情况下,可以与包括翻译在内的其他分子途径协同,对RNA靶标的选择以及RNA降解的速率和时间进行调控。这种调控在细胞水平上影响细胞生长、增殖和分化;在组织水平上有助于建立极性和调节信号传导。去腺苷酸化过程的失调也与从心脏病、神经发育障碍到癌症等多种人类疾病有关。在这篇综述中,我们将讨论由RNA去腺苷酸化复合体介导的基因表达控制机制,并强调支持RNA去腺苷酸化及其调控蛋白在发育过程和疾病中新兴作用的相关证据。对这些机制的系统理解将是开发有效治疗靶点策略的关键基础。

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1
RNA deadenylation complexes in development and diseases.发育与疾病中的RNA去腺苷酸化复合体
Biochem Cell Biol. 2023 Apr 1;101(2):131-147. doi: 10.1139/bcb-2022-0325. Epub 2023 Jan 16.
2
PABP Cooperates with the CCR4-NOT Complex to Promote mRNA Deadenylation and Block Precocious Decay.PABP 通过与 CCR4-NOT 复合物相互作用促进 mRNA 衰减并阻止早期衰变。
Mol Cell. 2018 Jun 21;70(6):1081-1088.e5. doi: 10.1016/j.molcel.2018.05.009.
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Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.mRNA去腺苷酸化机制:翻译终止因子eRF3与mRNA去腺苷酸酶之间分子相互作用的证据
Genes Dev. 2007 Dec 1;21(23):3135-48. doi: 10.1101/gad.1597707.
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Poly(A) tail degradation in human cells: ATF4 mRNA as a model for biphasic deadenylation.人细胞中的 Poly(A) 尾降解:以 ATF4 mRNA 为模型的两相去腺苷酸化。
Biochimie. 2021 Jun;185:128-134. doi: 10.1016/j.biochi.2021.03.013. Epub 2021 Mar 26.
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The enzyme activities of Caf1 and Ccr4 are both required for deadenylation by the human Ccr4-Not nuclease module.人源Ccr4-Not核酸酶模块进行去腺苷酸化反应时,Caf1和Ccr4的酶活性都是必需的。
Biochem J. 2015 Jul 1;469(1):169-76. doi: 10.1042/BJ20150304. Epub 2015 May 6.
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mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases.mRNA 去腺苷酸化通过 Ccr4-Not 核酸酶的不同活性与翻译速率偶联。
Mol Cell. 2018 Jun 21;70(6):1089-1100.e8. doi: 10.1016/j.molcel.2018.05.033.
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Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation.人源TOB是一种抗增殖转录因子,是一种依赖于聚腺苷酸结合蛋白的细胞质mRNA去腺苷酸化的正调节因子。
Mol Cell Biol. 2007 Nov;27(22):7791-801. doi: 10.1128/MCB.01254-07. Epub 2007 Sep 4.
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RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.RNA衰变机制:Ccr4-not和Pan2-Pan3复合物介导的去腺苷酸化
Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
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Molecular Insights into mRNA Polyadenylation and Deadenylation.mRNA 多聚腺苷酸化和去腺苷酸化的分子见解。
Int J Mol Sci. 2022 Sep 20;23(19):10985. doi: 10.3390/ijms231910985.
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The central region of CNOT1 and CNOT9 stimulates deadenylation by the Ccr4-Not nuclease module.CNOT1 和 CNOT9 的中心区域刺激 Ccr4-Not 核酸酶模块进行腺苷酸化。
Biochem J. 2018 Nov 9;475(21):3437-3450. doi: 10.1042/BCJ20180456.

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Translation efficiency driven by CNOT3 subunit of the CCR4-NOT complex promotes leukemogenesis.
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