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古冰中 DNA 分析揭示雪藻的进化,从世界种到特有种。

Evolution of snow algae, from cosmopolitans to endemics, revealed by DNA analysis of ancient ice.

机构信息

Center for Life Science Research, University of Yamanashi, Yamanashi, Japan.

Department of Animal Science, Faculty of Agriculture, Tokyo University of Agriculture, Kanagawa, Japan.

出版信息

ISME J. 2023 Apr;17(4):491-501. doi: 10.1038/s41396-023-01359-3. Epub 2023 Jan 17.

Abstract

Recent studies of microbial biogeography have revealed the global distribution of cosmopolitans and dispersal of regional endemics, but little is known about how these processes are affected by microbial evolution. Here, we compared DNA sequences from snow/glacier algae found in an 8000-year-old ice from a glacier in central Asia with those from modern snow samples collected at 34 snow samples from globally distributed sites at the poles and mid-latitudes, to determine the evolutionary relationship between cosmopolitan and endemic phylotypes of snow algae. We further applied a coalescent theory-based demographic model to the DNA sequences. We found that the genus Raphidonema (Trebouxiophyceae) was distributed over both poles and mid-latitude regions and was detected in different ice core layers, corresponding to distinct time periods. Our results indicate that the modern cosmopolitan phylotypes belonging to Raphidonema were persistently present long before the last glacial period. Furthermore, endemic phylotypes originated from ancestral cosmopolitan phylotypes, suggesting that modern regional diversity of snow algae in the cryosphere is a product of microevolution. These findings suggest that the cosmopolitans dispersed across the world and then derived new localized endemics, which thus improves our understanding of microbial community formation by microevolution in natural environments.

摘要

最近对微生物生物地理学的研究揭示了世界范围内的广布种和区域性特有种的分布情况,但对于这些过程如何受到微生物进化的影响知之甚少。在这里,我们比较了来自亚洲中部冰川的 8000 年前冰芯中发现的雪藻/冰川藻类的 DNA 序列,以及从全球分布在极地和中纬度地区的 34 个雪样中收集的现代雪样,以确定雪藻广布种和特有种的进化关系。我们进一步将基于合并理论的人口统计模型应用于 DNA 序列。我们发现,属于拉芬诺梅属(Trebouxiophyceae)的物种分布在两极和中纬度地区,并在不同的冰芯层中被检测到,对应于不同的时间段。我们的研究结果表明,现代属于拉芬诺梅属的广布种在末次冰期之前很久就一直存在。此外,特有种起源于祖先的广布种,这表明冰雪圈中现代雪藻的区域多样性是微进化的产物。这些发现表明,广布种在全球范围内传播,然后衍生出新的地方性特有种,从而提高了我们对自然环境中微生物群落形成的微进化的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97dd/10030584/bc1cc4ee8a11/41396_2023_1359_Fig1_HTML.jpg

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