Ng Eden Tian Hwa, Kinjo Akira R
Department of Mathematics, Faculty of Science, Universiti Brunei Darussalam, Jalan Tungku Link, Gadong, BE1410 Brunei Darussalam.
Biophys Rev. 2022 Dec 17;14(6):1359-1367. doi: 10.1007/s12551-022-01018-5. eCollection 2022 Dec.
Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This mode of evolution is expected to resolve the problem of gradualism (i.e., evolution by the slow accumulation of mutations that induce phenotypic variation) implied by the Modern Evolutionary Synthesis, in the face of a large environmental change. While experimental works are essential for validating that plasticity-led evolution indeed happened, we need computational models to gain insight into its underlying mechanisms and make qualitative predictions. Such computational models should include the developmental process and gene-environment interactions in addition to genetics and natural selection. We point out that gene regulatory network models can incorporate all the above notions. In this review, we highlight results from computational modelling of gene regulatory networks that consolidate the criteria of plasticity-led evolution. Since gene regulatory networks are mathematically equivalent to artificial recurrent neural networks, we also discuss their analogies and discrepancies, which may help further understand the mechanisms underlying plasticity-led evolution.
可塑性引导的进化是一种进化形式,即环境变化通过表型可塑性诱导出新的性状,之后在新环境下经过几代,这些新性状在基因上得到固定。面对重大环境变化时,这种进化模式有望解决现代综合进化论所暗示的渐变论问题(即通过诱导表型变异的突变缓慢积累实现进化)。虽然实验工作对于验证可塑性引导的进化确实发生至关重要,但我们需要计算模型来深入了解其潜在机制并做出定性预测。除了遗传学和自然选择外,此类计算模型还应包括发育过程和基因 - 环境相互作用。我们指出基因调控网络模型可以纳入上述所有概念。在本综述中,我们重点介绍了基因调控网络计算建模的结果,这些结果巩固了可塑性引导进化的标准。由于基因调控网络在数学上等同于人工递归神经网络,我们还讨论了它们的类比和差异,这可能有助于进一步理解可塑性引导进化的潜在机制。