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一种新的 Notch 信号模型:通过 Notch 配体二聚体控制 Notch 受体的内抑制。

A new model of Notch signalling: Control of Notch receptor cis-inhibition via Notch ligand dimers.

机构信息

School of Mathematics and Statistics, Xi'an Jiaotong University, Xi'an, China.

Mathematical Institute, Leiden University, Leiden, The Netherlands.

出版信息

PLoS Comput Biol. 2023 Jan 20;19(1):e1010169. doi: 10.1371/journal.pcbi.1010169. eCollection 2023 Jan.

Abstract

All tissue development and replenishment relies upon the breaking of symmetries leading to the morphological and operational differentiation of progenitor cells into more specialized cells. One of the main engines driving this process is the Notch signal transduction pathway, a ubiquitous signalling system found in the vast majority of metazoan cell types characterized to date. Broadly speaking, Notch receptor activity is governed by a balance between two processes: 1) intercellular Notch transactivation triggered via interactions between receptors and ligands expressed in neighbouring cells; 2) intracellular cis inhibition caused by ligands binding to receptors within the same cell. Additionally, recent reports have also unveiled evidence of cis activation. Whilst context-dependent Notch receptor clustering has been hypothesized, to date, Notch signalling has been assumed to involve an interplay between receptor and ligand monomers. In this study, we demonstrate biochemically, through a mutational analysis of DLL4, both in vitro and in tissue culture cells, that Notch ligands can efficiently self-associate. We found that the membrane proximal EGF-like repeat of DLL4 was necessary and sufficient to promote oligomerization/dimerization. Mechanistically, our experimental evidence supports the view that DLL4 ligand dimerization is specifically required for cis-inhibition of Notch receptor activity. To further substantiate these findings, we have adapted and extended existing ordinary differential equation-based models of Notch signalling to take account of the ligand dimerization-dependent cis-inhibition reported here. Our new model faithfully recapitulates our experimental data and improves predictions based upon published data. Collectively, our work favours a model in which net output following Notch receptor/ligand binding results from ligand monomer-driven Notch receptor transactivation (and cis activation) counterposed by ligand dimer-mediated cis-inhibition.

摘要

所有组织的发育和补充都依赖于打破对称性,从而导致祖细胞向更特化的细胞形态和功能分化。驱动这一过程的主要引擎之一是 Notch 信号转导途径,这是一种迄今为止在绝大多数后生动物细胞类型中发现的普遍存在的信号系统。广义上讲,Notch 受体活性受两种过程之间的平衡控制:1)通过相邻细胞中表达的受体和配体之间的相互作用触发的细胞间 Notch 转激活;2)由同一细胞内配体与受体结合引起的细胞内顺式抑制。此外,最近的报告还揭示了顺式激活的证据。虽然已经假设 Notch 受体簇集是依赖于上下文的,但到目前为止, Notch 信号被认为涉及受体和配体单体之间的相互作用。在这项研究中,我们通过 DLL4 的突变分析,在体外和组织培养细胞中,从生化角度证明了 Notch 配体可以有效地自我缔合。我们发现 DLL4 的膜近端 EGF 样重复序列是促进寡聚化/二聚化所必需的和充分的。从机制上讲,我们的实验证据支持这样一种观点,即 DLL4 配体二聚化是 Notch 受体活性的顺式抑制所必需的。为了进一步证实这些发现,我们已经改编和扩展了现有的基于常微分方程的 Notch 信号模型,以考虑这里报道的配体二聚体依赖性顺式抑制。我们的新模型忠实地再现了我们的实验数据,并根据已发表的数据提高了预测。总的来说,我们的工作支持这样一种模型,即在 Notch 受体/配体结合后,净输出结果来自配体单体驱动的 Notch 受体转激活(和顺式激活),而由配体二聚体介导的顺式抑制相抗衡。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8637/9891537/a27742ad4771/pcbi.1010169.g001.jpg

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