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铁死亡与免疫状态联合分析预测乳腺浸润性导管癌患者的生存。

Combination Analysis of Ferroptosis and Immune Status Predicts Patients Survival in Breast Invasive Ductal Carcinoma.

机构信息

Department of Biochemistry and Molecular Biology, Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, 3330 Hospital Dr. NW, Calgary, AB T2N 4N1, Canada.

Department of Obstetrics and Gynecology, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China.

出版信息

Biomolecules. 2023 Jan 11;13(1):147. doi: 10.3390/biom13010147.

Abstract

Ferroptosis is a new form of iron-dependent cell death and plays an important role during the occurrence and development of various tumors. Increasingly, evidence shows a convincing interaction between ferroptosis and tumor immunity, which affects cancer patients' prognoses. These two processes cooperatively regulate different developmental stages of tumors and could be considered important tumor therapeutic targets. However, reliable prognostic markers screened based on the combination of ferroptosis and tumor immune status have not been well characterized. Here, we chose the ssGSEA and ESTIMATE algorithms to evaluate the ferroptosis and immune status of a TCGA breast invasive ductal carcinoma (IDC) cohort, which revealed their correlation characteristics as well as patients' prognoses. The WGCNA algorithm was used to identify genes related to both ferroptosis and immunity. Univariate COX, LASSO regression, and multivariate Cox regression models were used to screen prognostic-related genes and construct prognostic risk models. Based on the ferroptosis and immune scores, the cohort was divided into three groups: a high-ferroptosis/low-immune group, a low-ferroptosis/high-immune group, and a mixed group. These three groups exhibited distinctive survival characteristics, as well as unique clinical phenotypes, immune characteristics, and activated signaling pathways. Among them, low-ferroptosis and high-immune statuses were favorable factors for the survival rates of patients. A total of 34 differentially expressed genes related to ferroptosis-immunity were identified among the three groups. After univariate, Lasso regression, and multivariate stepwise screening, two key prognostic genes (GNAI2, PSME1) were identified. Meanwhile, a risk prognosis model was constructed, which can predict the overall survival rate in the validation set. Lastly, we verified the importance of model genes in three independent GEO cohorts. In short, we constructed a prognostic model that assists in patient risk stratification based on ferroptosis-immune-related genes in IDC. This model helps assess patients' prognoses and guide individualized treatment, which also further eelucidatesthe molecular mechanisms of IDC.

摘要

铁死亡是一种新的铁依赖性细胞死亡形式,在各种肿瘤的发生和发展中起着重要作用。越来越多的证据表明,铁死亡与肿瘤免疫之间存在令人信服的相互作用,这影响了癌症患者的预后。这两个过程共同调节肿瘤的不同发育阶段,可以被认为是重要的肿瘤治疗靶点。然而,基于铁死亡和肿瘤免疫状态组合筛选的可靠预后标志物尚未得到很好的描述。在这里,我们选择了 ssGSEA 和 ESTIMATE 算法来评估 TCGA 乳腺浸润性导管癌 (IDC) 队列的铁死亡和免疫状态,揭示了它们的相关性特征以及患者的预后。WGCNA 算法用于识别与铁死亡和免疫相关的基因。单因素 COX、LASSO 回归和多因素 Cox 回归模型用于筛选预后相关基因并构建预后风险模型。基于铁死亡和免疫评分,将队列分为三组:高铁死亡/低免疫组、低铁死亡/高免疫组和混合组。这三组表现出不同的生存特征,以及独特的临床表型、免疫特征和激活的信号通路。其中,低铁死亡和高免疫状态是患者生存率的有利因素。在三组之间共鉴定出 34 个与铁死亡-免疫相关的差异表达基因。经过单因素、Lasso 回归和多因素逐步筛选,确定了两个关键预后基因 (GNAI2、PSME1)。同时,构建了风险预后模型,可以预测验证集中的总生存率。最后,我们在三个独立的 GEO 队列中验证了模型基因的重要性。总之,我们构建了一个基于 IDC 中铁死亡免疫相关基因的预后模型,用于辅助患者的风险分层。该模型有助于评估患者的预后并指导个体化治疗,也进一步阐明了 IDC 的分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70fa/9855618/c8288725e0d6/biomolecules-13-00147-g001.jpg

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