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韩国特有植物中井黄芩(唇形科)完整质体基因组的特征分析

Characterization of the complete plastid genome of Korean endemic, Nakai (Lamiaceae).

作者信息

Kamra Kashish, Jung Joonhyung, Kim Hyuk-Jin, Yoon Chang-Young, Kim Joo-Hwan

机构信息

Department of Life Sciences, Gachon University, Seongnam-si, Gyeonggi-do, Republic of Korea.

Korea National Arboretum, Pocheon-si, Gyeonggi-do, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2023 Jan 15;8(1):119-123. doi: 10.1080/23802359.2022.2156258. eCollection 2023.

DOI:10.1080/23802359.2022.2156258
PMID:36685657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9848336/
Abstract

Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of , which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other species. Our phylogenetic analysis revealed that formed a close relationship with and .

摘要

中井筋骨草是唇形科的一种韩国特有物种。尽管它很重要,但尚未对该物种进行基因组研究。在此,我们报告了中井筋骨草的完整质体基因组序列,这将为其自然保护以及质体基因组进化的未来研究提供有价值的信息。质体基因组长度为150,417 bp,包含一个82,140 bp的大单拷贝区域(LSC)和一个17,165 bp的小单拷贝区域(SSC),它们被一对25,556 bp的反向重复序列(IR)隔开。它编码113个基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。总体GC含量为38.3%,LSC、SSC和IR区域的GC含量分别为36.4%、32.2%和43.3%,这与其他物种一致。我们的系统发育分析表明,中井筋骨草与[具体物种1]和[具体物种2]形成了密切的关系。

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