Tang Chao, Deng Lingchen, Luo Qiang, He Guijun
Department of Cardiology, The Third People's Hospital of Chengdu, The Affiliated Hospital of Southwest Jiaotong University, Chengdu, China.
College of Basic Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Front Genet. 2023 Jan 4;13:998954. doi: 10.3389/fgene.2022.998954. eCollection 2022.
Atherosclerosis (AS) is the main cause of death in individuals with cardiovascular and cerebrovascular diseases. A growing body of evidence suggests that oxidative stress plays an essential role in Atherosclerosis pathology. The aim of this study was to determine genetic mechanisms associated with Atherosclerosis and oxidative stress, as well as to construct a diagnostic model and to investigate its immune microenvironment. Seventeen oxidative stress-related genes were identified. A four-gene diagnostic model was constructed using the least absolute shrinkage and selection operator (LASSO) algorithm based on these 17 genes. The area under the Receiver Operating Characteristic (ROC) curve (AUC) was 0.967. Based on the GO analysis, cell-substrate adherens junction and focal adhesion were the most enriched terms. KEGG analysis revealed that these overlapping genes were enriched in pathways associated with Alzheimer's disease and Parkinson's disease, as well as with prion disease pathways and ribosomes. Immune cell infiltration correlation analysis showed that the immune cells with significant differences were CD4 memory activated T cells and follicular helper T cells in the GSE43292 dataset and CD4 naïve T cells and CD4 memory resting T cells in the GSE57691 dataset. We identified 17 hub genes that were closely associated with oxidative stress in AS and constructed a four-gene (aldehyde dehydrogenase six family member A1 (), eukaryotic elongation factor 2 kinase (), glutaredoxin () and l-lactate dehydrogenase B ()) diagnostic model with good accuracy. The four-gene diagnostic model was also found to have good discriminatory efficacy for the immune cell infiltration microenvironment of AS. Overall, these findings provide valuable information and directions for future research into Atherosclerosis diagnosis and aid in the discovery of biological mechanisms underlying AS with oxidative stress.
动脉粥样硬化(AS)是心脑血管疾病患者的主要死因。越来越多的证据表明,氧化应激在动脉粥样硬化病理过程中起着至关重要的作用。本研究的目的是确定与动脉粥样硬化和氧化应激相关的遗传机制,构建诊断模型并研究其免疫微环境。共鉴定出17个与氧化应激相关的基因。基于这17个基因,使用最小绝对收缩和选择算子(LASSO)算法构建了一个四基因诊断模型。受试者操作特征(ROC)曲线下面积(AUC)为0.967。基于基因本体(GO)分析,细胞-基质粘附连接和粘着斑是最富集的术语。京都基因与基因组百科全书(KEGG)分析显示,这些重叠基因在与阿尔茨海默病、帕金森病相关的通路以及朊病毒病通路和核糖体中富集。免疫细胞浸润相关性分析表明,在GSE43292数据集中差异显著的免疫细胞是CD4记忆激活T细胞和滤泡辅助性T细胞,在GSE57691数据集中是CD4初始T细胞和CD4记忆静止T细胞。我们鉴定出17个与AS氧化应激密切相关的枢纽基因,并构建了一个准确性良好的四基因(醛脱氢酶六家族成员A1、真核生物延伸因子2激酶、谷氧还蛋白和L-乳酸脱氢酶B)诊断模型。还发现该四基因诊断模型对AS的免疫细胞浸润微环境具有良好的鉴别效能。总体而言,这些发现为未来动脉粥样硬化诊断研究提供了有价值的信息和方向,并有助于发现AS与氧化应激相关的生物学机制。