Bahri Bochra Amina, Parvathaneni Rajiv Krishna, Spratling Willis Turner, Saxena Harshita, Sapkota Suraj, Raymer Paul L, Martinez-Espinoza Alfredo D
Department of Plant Pathology, University of Georgia, Griffin, GA, United States.
Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Griffin, GA, United States.
Front Genet. 2023 Jan 5;13:1033437. doi: 10.3389/fgene.2022.1033437. eCollection 2022.
Dollar spot is one of the most damaging diseases in turfgrass, reducing its quality and playability. Two species, and (formerly ) have been reported so far in the United States To study the genome, two isolates H2 and H3, sampled from seashore paspalum in Hawaii in 2019 were sequenced Illumina paired-end sequencing by synthesis technology and PacBio SMRT sequencing. Both isolates were identified as . aff. , a novel species in the United States Using short and long reads, . aff. H3 contained 193 contigs with 48.6 Mbp and presented the most completed assembly and annotation among species. Out of the 13,428 protein models from AUGUSTUS, 349 cytoplasmic effectors and 13 apoplastic effectors were identified by EffectorP. To further decipher pathogenicity, . aff. genomes (H2 and H3), as well as available (LWC-10 and HRI11), (DRR09 and RB-19) genomes were screened for fifty-four pathogenesis determinants, previously identified in . Seventeen orthologs of pathogenicity genes have been identified in species involved in oxalic acid production (, ), mitogen-activated protein kinase cascade (, , ), appressorium formation (, , , , ) and glycolytic pathway (). Within these genes, 366 species-specific SNPs were recorded between species; twenty-eight were non-synonymous and non-conservative. The predicted protein structure of six of these genes showed superimposition of the models among spp. The genomic variations revealed here could potentially lead to differences in pathogenesis and other physiological functions among species.
美元斑病是草坪草中最具破坏性的病害之一,会降低草坪质量和可使用性。到目前为止,在美国已报道了两个物种,即[物种名1]和[物种名2](以前为[旧物种名])。为了研究[物种名2]的基因组,2019年从夏威夷海滨雀稗中采集的两个分离株H2和H3,采用Illumina合成技术的双端测序和PacBio SMRT测序进行了测序。这两个分离株均被鉴定为[物种名2]亲缘种,是美国的一个新物种。利用短读长和长读长,[物种名2]亲缘种H3包含193个重叠群,大小为48.6 Mbp,在[相关物种]中呈现出最完整的组装和注释。在来自AUGUSTUS的13428个蛋白质模型中,EffectorP鉴定出349个细胞质效应子和13个质外体效应子。为了进一步解读[物种名2]亲缘种的致病性,对[物种名2]亲缘种(H2和H3)以及可用的[物种名1](LWC - 10和HRI11)、[物种名3](DRR09和RB - 19)基因组进行了54个先前在[相关物种]中鉴定出的致病决定因素的筛选。在参与草酸产生([相关基因1]、[相关基因2])mitogen - 活化蛋白激酶级联反应([相关基因3]、[相关基因4]、[相关基因5])、附着胞形成([相关基因6]、[相关基因7]、[相关基因8]、[相关基因9]、[相关基因10])和糖酵解途径([相关基因11])的[相关物种]中,已鉴定出17个致病基因的直系同源物。在这些基因中,在[相关物种]之间记录到366个物种特异性单核苷酸多态性;其中28个是非同义且非保守的。这六个基因的预测蛋白质结构显示了[相关物种]之间模型的叠加。这里揭示的基因组变异可能会导致[相关物种]之间在致病性和其他生理功能上的差异。