Chen Leiming, Shi Chaofan, Zhou Guoping, Yang Xiaofeng, Xiong Zhenqin, Ma Xiaoxue, Zhu Lan, Ma Xuejiao, Mao Yan, Hu Yifang, Wang Jimei, Tang Xinfang, Bao Yunlei, Ma Yunxia, Luo Fei, Wu Chuyan, Jiang Feng
Department of Laboratory Medicine, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Department of Radiology, Yongping County People's Hospital, Dali, China.
Front Genet. 2023 Jan 4;13:1074723. doi: 10.3389/fgene.2022.1074723. eCollection 2022.
Pyroptosis plays a crucial role in bronchopulmonary dysplasia (BPD) and is associated with various lung injury illnesses. However, the function of pyroptosis-related genes (PRGs) in BPD remains poorly understood. The gene expression omnibus (GEO) database was searched for information on genes associated with BPD. Twenty-five BPD-related DE-PRGs were identified, all of which were closely associated with pyroptosis regulation and immunological response. LASSO and SVM-RFE algorithms identified CHMP7, NLRC4, NLRP2, NLRP6, and NLRP9 among the 25 differentially expressed PRGs as marker genes with acceptable diagnostic capabilities. Using these five genes, we also generated a nomogram with excellent predictive power. Annotation enrichment analyses revealed that these five genes may be implicated in BPD and numerous BPD-related pathways. In addition, the ceRNA network showed an intricate regulatory link based on the marker genes. In addition, CIBERSORT-based studies revealed that alterations in the immunological microenvironment of BPD patients may be associated with the marker genes. We constructed a diagnostic nomogram and gave insight into the mechanism of BPD. Its diagnostic value for BPD must be evaluated in further research before it can be used in clinical practice.
细胞焦亡在支气管肺发育不良(BPD)中起关键作用,且与多种肺损伤疾病相关。然而,细胞焦亡相关基因(PRGs)在BPD中的功能仍知之甚少。对基因表达综合数据库(GEO)进行检索,以获取与BPD相关基因的信息。共鉴定出25个与BPD相关的差异表达PRGs,所有这些基因均与细胞焦亡调控和免疫反应密切相关。LASSO和支持向量机递归特征消除(SVM-RFE)算法在这25个差异表达的PRGs中确定CHMP7、NLRC4、NLRP2、NLRP6和NLRP9为具有可接受诊断能力的标记基因。利用这五个基因,我们还生成了一个具有出色预测能力的列线图。注释富集分析表明,这五个基因可能与BPD及众多与BPD相关的通路有关。此外,ceRNA网络显示基于标记基因存在复杂的调控联系。此外,基于CIBERSORT的研究表明,BPD患者免疫微环境的改变可能与标记基因有关。我们构建了一个诊断列线图,并深入了解了BPD的机制。其对BPD的诊断价值必须在进一步研究中进行评估,才能应用于临床实践中。