一种新型的铜死亡相关长链非编码RNA特征可预测膀胱癌的预后和治疗反应。
A novel cuproptosis-related lncRNA signature predicts prognosis and therapeutic response in bladder cancer.
作者信息
Cai Jinming, Xie Haoran, Yan Yilin, Huang Zhengnan, Tang Pengfei, Cao Xiangqian, Wang Zeyi, Yang Chenkai, Wen Jiling, Tan Mingyue, Zhang Fang, Shen Bing
机构信息
Department of Urology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Department of Urology, Shanghai East Hospital, Tongji University School of Medicine, Shanghai, China.
出版信息
Front Genet. 2023 Jan 4;13:1082691. doi: 10.3389/fgene.2022.1082691. eCollection 2022.
Bladder cancer (BC) ranks the tenth in the incidence of global tumor epidemiology. LncRNAs and cuproptosis were discovered to regulate the cell death. Herein, we downloaded transcriptome profiling, mutational data, and clinical data on patients from The Cancer Genome Atlas (TCGA). High- and low-risk BC patients were categorized. Three CRLs (AL590428.1, AL138756.1 and GUSBP11) were taken into prognostic signature through least absolute shrinkage and selection operator (LASSO) Cox regression. Worse OS and PFS were shown in high-risk group ( < 0.05). ROC, independent prognostic analyses, nomogram and C-index were predicted CRLs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated IncRNAs play a biological role in BC progression. Immune-related functions showed the high-risk group received more benefit from immunotherapy and had stronger immune responses, and the overall survival was better ( < 0.05). Finally, a more effective outcome ( < 0.05) was found from clinical immunotherapy the TIDE algorithm and many potential anti-tumor drugs were identified. In our study, the cuproptosis-related signature provided a novel tool to predict the prognosis in BC patients accurately and provided a novel strategy for clinical immunotherapy and clinical applications.
膀胱癌(BC)在全球肿瘤流行病学发病率中排名第十。研究发现长链非编码RNA(lncRNAs)和铜死亡可调节细胞死亡。在此,我们从癌症基因组图谱(TCGA)下载了患者的转录组谱、突变数据和临床数据。对高危和低危BC患者进行了分类。通过最小绝对收缩和选择算子(LASSO)Cox回归将三个铜死亡相关长链非编码RNA(CRLs,即AL590428.1、AL138756.1和GUSBP11)纳入预后特征。高危组的总生存期(OS)和无进展生存期(PFS)较差(P<0.05)。通过受试者工作特征曲线(ROC)、独立预后分析、列线图和C指数对CRLs进行了预测。基因本体论(GO)和京都基因与基因组百科全书(KEGG)分析表明lncRNAs在BC进展中发挥生物学作用。免疫相关功能显示高危组从免疫治疗中获益更多,免疫反应更强,总体生存期更好(P<0.05)。最后,通过肿瘤免疫功能障碍和排斥(TIDE)算法从临床免疫治疗中发现了更有效的结果(P<0.05),并鉴定了许多潜在的抗肿瘤药物。在我们的研究中,铜死亡相关特征为准确预测BC患者的预后提供了一种新工具,并为临床免疫治疗和临床应用提供了一种新策略。