• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子树中的嵌套单例:在杨柳科的案例中,添加来自数字化植物标本馆标本的形态学和地理数据以在物种水平上测试分类群概念的效用

Nested singletons in molecular trees: Utility of adding morphological and geographical data from digitized herbarium specimens to test taxon concepts at species level in the case of (Salicaceae).

作者信息

de Mestier Astrid, Lücking Robert, Gutierrez Jorge, Brokamp Grischa, Celis Marcela, Borsch Thomas

机构信息

Botanischer Garten Freie Universität Berlin Berlin Germany.

Institut für Biologie - Systematische Botanik und Pflanzengeographie Freie Universität Berlin Berlin Germany.

出版信息

Ecol Evol. 2023 Jan 17;13(1):e9736. doi: 10.1002/ece3.9736. eCollection 2023 Jan.

DOI:10.1002/ece3.9736
PMID:36694555
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9843533/
Abstract

Using the genus , we assessed the status of nested singletons: individual specimens corresponding to accepted species but in molecular trees appearing nested within clades of closely related species. Normally, such cases would be left undecided, while on the other hand, timely taxonomic decisions are required. We argue that morphological, chorological, and ecological data can be informative to illuminate patterns of speciation. Their use can provide a first step in testing taxon concepts at species level. We focused on five cases of nested singletons in trees of the genus . We employed PCA and cluster analysis to assess phenotypic differentiation. Using geocoordinates, we calculated niche space differentiation based on 19 bioclim variables, by means of PCA and niche equivalency and similarity tests and generated dot maps. We found that the singletons were morphologically distinctive in two of the five cases ( and ), relatively distinctive in two other cases ( and ), and partially overlapping in the last case (). For two cases ( and ), ecological niche space was broadly overlapping, in two cases it was found broadly nested ( and ), and in one case narrowly nested (), but in no case niche differentiation was observed. Niche overlap, similarity and equivalency showed corresponding patterns. Given these data, one would interpret and as presumably well-distinguished taxa, their narrow distribution ranges suggesting recently emerging lineages. The other three cases are not clearcut. Morphological data would suggest particularly conspecific with , but differences in the distribution are intriguing. Our approach would reject the notion of potential synonymy based on nested phylogenetic placement for at least two of the five cases. The other case also shows no complete lack of differentiation which would support synonymy.

摘要

利用该属,我们评估了嵌套单型的状况:对应于已接受物种的单个标本,但在分子树中出现在亲缘关系密切的物种分支内。通常情况下,此类情况会悬而未决,而另一方面,又需要及时做出分类学决定。我们认为形态学、分布学和生态学数据有助于阐明物种形成模式。它们的使用可为在物种水平上检验分类单元概念提供第一步。我们聚焦于该属树木中的五个嵌套单型案例。我们采用主成分分析(PCA)和聚类分析来评估表型分化。利用地理坐标,我们基于19个生物气候变量,通过主成分分析以及生态位等效性和相似性检验计算生态位空间分化,并生成点状图。我们发现,在五个案例中的两个案例(和)中,单型在形态上具有明显差异,在另外两个案例(和)中相对有差异,而在最后一个案例()中部分重叠。对于两个案例(和),生态位空间广泛重叠,在两个案例中发现广泛嵌套(和),在一个案例中狭窄嵌套(),但在任何案例中均未观察到生态位分化。生态位重叠、相似性和等效性呈现出相应模式。鉴于这些数据,人们可能会将和解释为大概是界限分明的分类单元,它们狭窄的分布范围表明是最近出现的谱系。另外三个案例并不明确。形态学数据表明特别是与同种,但分布上的差异很有趣。我们的方法将基于系统发育嵌套位置拒绝至少五个案例中的两个案例存在潜在同义关系的观点。另一个案例也未显示出完全缺乏支持同义关系的分化。

相似文献

1
Nested singletons in molecular trees: Utility of adding morphological and geographical data from digitized herbarium specimens to test taxon concepts at species level in the case of (Salicaceae).分子树中的嵌套单例:在杨柳科的案例中,添加来自数字化植物标本馆标本的形态学和地理数据以在物种水平上测试分类群概念的效用
Ecol Evol. 2023 Jan 17;13(1):e9736. doi: 10.1002/ece3.9736. eCollection 2023 Jan.
2
Divergence is not enough: the use of ecological niche models for the validation of taxon boundaries.差异并不足够:利用生态位模型验证分类单元界限
Plant Biol (Stuttg). 2017 Nov;19(6):1003-1011. doi: 10.1111/plb.12600. Epub 2017 Jul 30.
3
Ecological niche differentiation in Chiroxiphia and Antilophia manakins (Aves: Pipridae).蚁䴕和阔嘴鸟属(雀形目:蚁䴕科)的生态位分化。
PLoS One. 2021 Jan 13;16(1):e0243760. doi: 10.1371/journal.pone.0243760. eCollection 2021.
4
Recent diversification of Chrysoritis butterflies in the South African Cape (Lepidoptera: Lycaenidae).南非开普地区 Chrysoritis 蝴蝶的近期多样化(鳞翅目:蛱蝶科)。
Mol Phylogenet Evol. 2020 Jul;148:106817. doi: 10.1016/j.ympev.2020.106817. Epub 2020 Apr 11.
5
The Warps and Wefts of a Polyploidy Complex: Integrative Species Delimitation of the Diploid (Compositae, Anthemideae) Representatives.多倍体复合体的经纬:菊科春黄菊族二倍体代表植物的综合物种界定
Plants (Basel). 2022 Jul 19;11(14):1878. doi: 10.3390/plants11141878.
6
Patterns of phylogenetic diversification in the Dollarbird (Eurystomus orientalis) and Azure Roller (Eurystomus azureus) complex.雀形目佛法僧目佛法僧科佛法僧属鸟类的系统发育多样性模式。
Mol Phylogenet Evol. 2023 Dec;189:107909. doi: 10.1016/j.ympev.2023.107909. Epub 2023 Aug 22.
7
A snapshot of progenitor-derivative speciation in Iberodes (Boraginaceae).伊比利亚草属(紫草科)祖裔物种形成的一个快照。
Mol Ecol. 2022 Jun;31(11):3192-3209. doi: 10.1111/mec.16459. Epub 2022 Apr 26.
8
Species delimitation of the ticks based on phylogenetic clustering and niche modeling.基于系统发育聚类和生态位建模的蜱类物种界定。
PeerJ. 2019 May 10;7:e6911. doi: 10.7717/peerj.6911. eCollection 2019.
9
Species Delimitation in a Polyploid Group of Iberian (Campanulaceae) Unveils Coherence between Cryptic Speciation and Biogeographical Regionalization.伊比利亚多倍体组(桔梗科)的物种界定揭示了隐存物种形成与生物地理区域化之间的一致性。
Plants (Basel). 2023 Dec 15;12(24):4176. doi: 10.3390/plants12244176.
10
Plastome phylogenomics and morphological traits analyses provide new insights into the phylogenetic position, species delimitation and speciation of Triplostegia (Caprifoliaceae).质体基因组系统发育学和形态特征分析为忍冬科三轮草属的系统发育位置、物种界定和物种形成提供了新的见解。
BMC Plant Biol. 2023 Dec 15;23(1):645. doi: 10.1186/s12870-023-04663-4.

引用本文的文献

1
Complete Chloroplast Genome Analysis of : Gene Loss at the IR Boundary and Monophyletic Evolution Within .关于……的完整叶绿体基因组分析:IR边界处的基因丢失及……内的单系进化
Plants (Basel). 2025 Apr 30;14(9):1356. doi: 10.3390/plants14091356.
2
Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data.基于地理和分类学出现情况的R语言清理(gatoRs):用于处理生物多样性数据的R包和工作流程。
Appl Plant Sci. 2024 Mar 21;12(2):e11575. doi: 10.1002/aps3.11575. eCollection 2024 Mar-Apr.
3
A new species of Jacq. (Salicaceae) from Central Panama and insights into its phylogenetic position within the genus.

本文引用的文献

1
Revised Species Delimitation in the Giant Water Lily Genus (Nymphaeaceae) Confirms a New Species and Has Implications for Its Conservation.大王莲属(睡莲科)的修订物种界定确认了一个新物种及其保护意义。
Front Plant Sci. 2022 Jul 4;13:883151. doi: 10.3389/fpls.2022.883151. eCollection 2022.
2
Plant migration under long-lasting hyperaridity - phylogenomics unravels recent biogeographic history in one of the oldest deserts on Earth.长期极端干旱条件下的植物迁移——系统发育基因组学揭示地球最古老沙漠之一的近期生物地理历史。
New Phytol. 2022 Jun;234(5):1863-1875. doi: 10.1111/nph.18082. Epub 2022 Mar 28.
3
The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis.
来自巴拿马中部的一个新的雅克属(杨柳科)物种及其在该属内系统发育位置的见解。
PhytoKeys. 2023 Dec 6;236:97-112. doi: 10.3897/phytokeys.236.108651. eCollection 2023.
简约棘轮法:一种快速简约分析的新方法。
Cladistics. 1999 Dec;15(4):407-414. doi: 10.1111/j.1096-0031.1999.tb00277.x.
4
Phylogeny, classification, and character evolution of tribe Citharexyleae (Verbenaceae).族 Citharexyleae(马鞭草科)的系统发育、分类和特征演化。
Am J Bot. 2021 Oct;108(10):1982-2001. doi: 10.1002/ajb2.1750. Epub 2021 Oct 20.
5
Phylogeny of Lantana, Lippia, and related genera (Lantaneae: Verbenaceae).马缨丹、紫芳草和相关属的系统发育(马鞭草科:马鞭草属)。
Am J Bot. 2021 Aug;108(8):1354-1373. doi: 10.1002/ajb2.1708. Epub 2021 Aug 21.
6
Phylogeny, origin, and dispersal of Dubyaea (Asteraceae) based on Hyb-Seq data.基于Hyb-Seq数据的川木香属(菊科)系统发育、起源及扩散研究
Mol Phylogenet Evol. 2021 Nov;164:107289. doi: 10.1016/j.ympev.2021.107289. Epub 2021 Aug 8.
7
The Mediterranean region - a hotspot for plant biogeographic research.地中海地区——植物生物地理学研究的热点地区。
New Phytol. 2004 Oct;164(1):11-14. doi: 10.1111/j.1469-8137.2004.01194.x.
8
Pleistocene aridification underlies the evolutionary history of the Caribbean endemic, insular, giant Consolea (Opuntioideae).更新世干旱是加勒比特有、岛屿特有的巨型仙人掌属(Opuntioideae)进化历史的基础。
Am J Bot. 2021 Feb;108(2):200-215. doi: 10.1002/ajb2.1610. Epub 2021 Feb 17.
9
Editorial: Integrative and Translational Uses of Herbarium Collections Across Time, Space, and Species.社论:植物标本馆馆藏在不同时间、空间和物种中的综合与转化应用
Front Plant Sci. 2020 Aug 21;11:1319. doi: 10.3389/fpls.2020.01319. eCollection 2020.
10
An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae.对菊科多个进化时间尺度上的单个全家族杂交捕获位点集进行实证评估。
Appl Plant Sci. 2019 Oct 25;7(10):e11295. doi: 10.1002/aps3.11295. eCollection 2019 Oct.