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凤仙花属(凤仙花科)质体基因组进化和系统基因组学。

Plastome evolution and phylogenomics of Impatiens (Balsaminaceae).

机构信息

Laboratory of Systematic and Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.

College of Life and Environmental Science, Wenzhou University, Wenzhou, 325035, China.

出版信息

Planta. 2023 Jan 25;257(2):45. doi: 10.1007/s00425-023-04078-3.

Abstract

This study reported seven new plastomes from Impatiens and observed three highly variable regions for phylogeny and DNA barcoding, which resolved the relationships among sections of subgenus Impatiens. Impatiens L. (Balsaminaceae, Ericales) is one of the largest and most diverse genera of angiosperms, widely known for its taxonomic difficulty. In this study, we reevaluated the infrageneric relationships within the genus Impatiens, using complete plastome sequence data. Seven complete plastomes of Impatiens (representing 6 species) were newly sequenced and characterized along with 20 previously published plastomes of other Impatiens species, plus 2 plastomes of outgroups (Hydrocera triflora, Balsaminaceae; Marcgravia coriacea, Marcgraviaceae). The total size of these 29 plastomes ranged from 151,538 bp to 152,917 bp, except 2 samples of Impatiens morsei, which exhibited a shorter length and lost some genes encoding NADH dehydrogenase subunits. Moreover, the number of simple sequence repeats (SSRs) ranged from 51 to 113, and the number of long repeats from 17 to 26. In addition, three highly variable regions were identified (trnG-GCC (The previous one), ndhF-rpl32-trnL-UGA-ccsA, and ycf1). Our phylogenomic analysis based on 80 plastome-derived protein-coding genes strongly supported the monophyly of Impatiens and its two subgenera (Clavicarpa and Impatiens), and fully resolved relationships among the six (out of seven) sampled sections of subgenus Impatiens. Overall, the plastome DNA markers and phylogenetic results reported in this study will facilitate future identification, taxonomic and DNA barcoding studies in Impatiens as well as evolutionary studies in Balsaminaceae.

摘要

本研究报道了来自凤仙花属的 7 个新质体,并观察到了 3 个高度可变的区域,用于系统发育和 DNA 条形码,这些区域解决了亚属凤仙花各节之间的关系。凤仙花属(凤仙花科,藜科)是被子植物中最大和最多样化的属之一,以其分类学难度而广为人知。在本研究中,我们使用完整的质体序列数据重新评估了属内的亚属关系。新测序并表征了凤仙花属的 7 个完整质体(代表 6 个物种),以及 20 个先前发表的其他凤仙花种的质体,外加 2 个外群的质体(Hydrocera triflora,凤仙花科;Marcgravia coriacea,Marcgraviaceae)。这 29 个质体的总大小范围为 151538 bp 至 152917 bp,除了 2 个 Impatiens morsei 样本,它们的长度较短,失去了一些编码 NADH 脱氢酶亚基的基因。此外,简单序列重复(SSR)的数量范围从 51 到 113,长重复的数量从 17 到 26。此外,还确定了 3 个高度可变的区域(trnG-GCC(前一个),ndhF-rpl32-trnL-UGA-ccsA 和 ycf1)。我们基于 80 个质体衍生的蛋白质编码基因的系统基因组分析强烈支持凤仙花及其两个亚属(Clavicarpa 和 Impatiens)的单系性,并充分解决了亚属凤仙花 6 个(7 个采样)节之间的关系。总的来说,本研究报告的质体 DNA 标记和系统发育结果将有助于未来在凤仙花属以及凤仙花科的进化研究中进行鉴定、分类和 DNA 条形码研究。

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