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通过氢键分子夹的序列特异性堆积实现分子拼合

Molecular Tetris by sequence-specific stacking of hydrogen bonding molecular clips.

作者信息

Lee Hyun, Lee Dongwhan

机构信息

Department of Chemistry, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Korea.

出版信息

Commun Chem. 2022 Dec 28;5(1):180. doi: 10.1038/s42004-022-00802-4.

DOI:10.1038/s42004-022-00802-4
PMID:36697760
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9814962/
Abstract

A face-to-face stacking of aromatic rings is an effective non-covalent strategy to build functional architectures, as elegantly exemplified with protein folding and polynucleotide assembly. However, weak, non-directional, and context-sensitive van der Waals forces pose a significant challenge if one wishes to construct well-organized π-stacks outside the confines of the biological matrix. To meet this design challenge, we have devised a rigid polycyclic template to create a non-collapsible void between two parallel oriented π-faces. In solution, these shape-persistent aromatic clips self-dimerize to form quadruple π-stacks, the thermodynamic stability of which is enhanced by self-complementary N-H···N hydrogen bonds, and finely regulated by the regioisomerism of the π-canopy unit. With assistance from sufficient electrostatic polarization of the π-surface and bifurcated hydrogen bonds, a small polyheterocyclic guest can effectively compete against the self-dimerization of the host to afford a triple π-stack inclusion complex. A combination of solution spectroscopic, X-ray crystallographic, and computational studies aided a detailed understanding of this cooperative vs competitive process to afford layered aromatics with extraordinary structural regularity and fidelity.

摘要

芳香环的面对面堆积是构建功能结构的一种有效非共价策略,蛋白质折叠和多核苷酸组装就是很好的例证。然而,如果想在生物基质范围之外构建有序的π-堆积,弱的、非定向的且依赖环境的范德华力会带来重大挑战。为应对这一设计挑战,我们设计了一种刚性多环模板,以在两个平行取向的π-面之间创建一个不可塌陷的空隙。在溶液中,这些形状持久的芳香夹子会自二聚形成四重π-堆积,其热力学稳定性通过自互补的N-H···N氢键得到增强,并由π-冠单元的区域异构精细调节。在π-表面充分的静电极化和分叉氢键的辅助下,一个小的多杂环客体可以有效地与主体的自二聚作用竞争,从而形成一个三重π-堆积包合物。溶液光谱、X射线晶体学和计算研究相结合,有助于详细理解这种协同与竞争过程,从而得到具有非凡结构规整性和保真度的层状芳烃。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/db71e72853e7/42004_2022_802_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/341b4b334c04/42004_2022_802_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/ebf626c8da6e/42004_2022_802_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/90a56185cbd5/42004_2022_802_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/23d5f8556ed1/42004_2022_802_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/2ec85acf6fde/42004_2022_802_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/0e5d50b5c0e4/42004_2022_802_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/f3d09b12c67f/42004_2022_802_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/73f737d387e0/42004_2022_802_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/b235e828d129/42004_2022_802_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/db71e72853e7/42004_2022_802_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/341b4b334c04/42004_2022_802_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/ebf626c8da6e/42004_2022_802_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/90a56185cbd5/42004_2022_802_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/23d5f8556ed1/42004_2022_802_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/2ec85acf6fde/42004_2022_802_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/0e5d50b5c0e4/42004_2022_802_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/f3d09b12c67f/42004_2022_802_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/73f737d387e0/42004_2022_802_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/b235e828d129/42004_2022_802_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7134/9814962/db71e72853e7/42004_2022_802_Fig10_HTML.jpg

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