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一种用于培养模式产甲烷菌的统一且简单的培养基。

A unified and simple medium for growing model methanogens.

作者信息

Dzofou Ngoumelah Daniel, Harnisch Falk, Sulheim Snorre, Heggeset Tonje Marita Bjerkan, Aune Ingvild Haugnes, Wentzel Alexander, Kretzschmar Jörg

机构信息

Biochemical Conversion Department, DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, Germany.

Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany.

出版信息

Front Microbiol. 2023 Jan 10;13:1046260. doi: 10.3389/fmicb.2022.1046260. eCollection 2022.

Abstract

Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for , and . The aim was to provide a medium for follow-up co-culture studies using specific methanogens and spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( ) and doubling times ( ) of each methanogen. The and based on methane accumulation in the headspace showed values consistent with literature values for and . However, and based on methane accumulation in the headspace differed from literature data for but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from and for as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity.

摘要

除了在厌氧消化(AD)中的典型应用外,产甲烷古菌还被用于广泛的其他应用。针对一种特定应用使用不同的产甲烷古菌需要优化培养基,以使不同菌株在相同环境条件下生长,例如在用于(生物)电甲烷化的微生物电化学技术(MET)中。在此,我们提出了一种新的培养基(BFS01),它是从DSM - 120培养基改编而来,省略了刃天青、酵母提取物、酪蛋白胨,并使用了低盐浓度,该培养基针对[具体菌种1]、[具体菌种2]和[具体菌种3]进行了优化。目的是为使用特定产甲烷菌和以[特定菌种]为主的生物膜阳极进行后续共培养研究提供一种培养基。所有三种产甲烷菌在BFS01培养基中均表现出生长和活性。这通过估算每种产甲烷菌的比生长速率([比生长速率符号])和倍增时间([倍增时间符号])得以证明。基于顶空甲烷积累的[具体参数1]和[具体参数2]显示出与文献中[具体菌种1]和[具体菌种2]的值一致。然而,基于顶空甲烷积累的[具体参数3]和[具体参数4]与[具体菌种3]的文献数据不同,但仍允许足够的生长。培养基中盐浓度的降低和化学复杂有机成分的省略可能导致了观察到的[具体菌种3]的[具体参数3]和[具体参数4]的偏差以及形态的改变。基于16S rRNA基因的扩增子测序和全基因组纳米孔测序进一步证实了纯度和物种身份。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef27/9871610/d992c6c09893/fmicb-13-1046260-g001.jpg

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