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微小RNA(miRNA)AGO蛋白的催化活性在miRNA星链失稳中起适度作用。

The catalytic activity of microRNA Argonautes plays a modest role in microRNA star strand destabilization in .

作者信息

Kotagama Kasuen, Grimme Acadia L, Braviner Leah, Yang Bing, Sakhawala Rima M, Yu Guoyun, Benner Lars Kristian, Joshua-Tor Leemor, McJunkin Katherine

机构信息

Laboratory of Cellular and Developmental Biology, NIDDK Intramural Research Program, 50 South Drive, Bethesda, MD 20892, USA.

Johns Hopkins University Department of Biology, 3400 N. Charles Street, Baltimore, MD 21218, USA.

出版信息

bioRxiv. 2024 Jan 9:2023.01.19.524782. doi: 10.1101/2023.01.19.524782.

Abstract

Many Argonaute proteins can cleave RNA ("slicing") as part of the microRNA-induced silencing complex (miRISC), even though miRNA-mediated target repression is generally independent of target cleavage. Here we use genome editing in to examine the role of miRNA-guided slicing in organismal development. In contrast to previous work, slicing-inactivating mutations did not interfere with normal development when introduced by CRISPR. We find that unwinding and decay of miRNA star strands is weakly defective in the absence of slicing, with the largest effect observed in embryos. Argonaute-Like Gene 2 (ALG-2) is more dependent on slicing for unwinding than ALG-1. The miRNAs that displayed the greatest (albeit minor) dependence on slicing for unwinding tend to form stable duplexes with their star strand, and in some cases, lowering duplex stability alleviates dependence on slicing. Gene expression changes were consistent with negligible to moderate loss of function for miRNA guides whose star strand was upregulated, suggesting a reduced proportion of mature miRISC in slicing mutants. While a few miRNA guide strands are reduced in the mutant background, the basis of this is unclear since changes were not dependent on EBAX-1, a factor in the Target-Directed miRNA Degradation (TDMD) pathway. Overall, this work defines a role for miRNA Argonaute slicing in star strand decay; future work should examine whether this role could have contributed to the selection pressure to conserve catalytic activity of miRNA Argonautes across the metazoan phylogeny.

摘要

许多AGO蛋白可以切割RNA(“切割”),作为微小RNA诱导沉默复合体(miRISC)的一部分,尽管微小RNA介导的靶标抑制通常独立于靶标切割。在这里,我们利用基因组编辑来研究微小RNA引导的切割在生物体发育中的作用。与之前的研究不同,当通过CRISPR引入切割失活突变时,并不会干扰正常发育。我们发现,在没有切割的情况下,微小RNA星链的解旋和降解存在轻微缺陷,在胚胎中观察到的影响最大。类AGO基因2(ALG-2)比ALG-1更依赖切割来进行解旋。在解旋过程中对切割表现出最大(尽管是轻微)依赖性的微小RNA,往往与其星链形成稳定的双链体,在某些情况下,降低双链体稳定性可减轻对切割的依赖性。基因表达变化与星链上调的微小RNA引导序列功能丧失可忽略不计到中等程度一致,这表明在切割突变体中成熟miRISC的比例降低。虽然在突变背景下有少数微小RNA引导链减少,但其原因尚不清楚,因为这些变化不依赖于靶标导向的微小RNA降解(TDMD)途径中的一个因子EBAX-1。总体而言,这项工作确定了微小RNA AGO切割在星链降解中的作用;未来的工作应该研究这一作用是否有助于在整个后生动物系统发育中保留微小RNA AGO催化活性的选择压力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf7/10786515/d4552d7353f3/nihpp-2023.01.19.524782v2-f0001.jpg

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