Zhu Zemin, Rahman Ziaur, Aamir Muhammad, Shah Syed Zahid Ali, Hamid Sattar, Bilawal Akhunzada, Li Sihong, Ishfaq Muhammad
College of Computer Science, Huanggang Normal University Huanggang 438000 China
Department of Pathology, Faculty of Veterinary and Animal Sciences, The Islamia University of Bahawalpur-Pakistan Pakistan.
RSC Adv. 2023 Jan 11;13(3):2057-2069. doi: 10.1039/d2ra06178c. eCollection 2023 Jan 6.
(MP) is one of the most common pathogenic organisms causing upper and lower respiratory tract infections, lung injury, and even death in young children. Toll-like receptors (TLRs) play an important role in innate immunity by allowing the host to recognize pathogens invading the body. Previous studies demonstrated that TLR4 is a potential therapeutic target for the treatment of MP pneumonia. Therefore, the present study aimed to screen biologically active ingredients that target the TLR4 receptor pathway. We first used molecular docking to screen out the active compounds inhibiting the TLR4 pathway, and then used regression and classification machine learning algorithms to establish a quantitative structure-activity relationship (QSAR) model to predict the biological activity of the screened compounds. A total of 78 molecules were used in QSAR modelling, which were retrieved from the ChEMBL database. The QSAR models had acceptable correlation coefficients of on the training and testing dataset in the range of 0.96 to 0.91 and 0.93 to 0.76, respectively. The multiclass classification models showed accuracy on training and testing data within ranges of 1.0 to 0.70, 0.96 to 0.63, and log loss ranges from 0.27 to 8.63, respectively. In addition, molecular descriptors and fingerprints have been studied as structural elements involved in increased and decreased inhibitory activities. These results provide a quantitative analysis of QSAR and classification models applicable for high-throughput screening, as well as insights into the mechanisms of inhibition of TLR4 antagonists.
肺炎支原体(MP)是导致幼儿上、下呼吸道感染、肺损伤甚至死亡的最常见致病微生物之一。Toll样受体(TLR)通过使宿主识别侵入体内的病原体,在先天免疫中发挥重要作用。先前的研究表明,TLR4是治疗MP肺炎的潜在治疗靶点。因此,本研究旨在筛选靶向TLR4受体途径的生物活性成分。我们首先使用分子对接筛选出抑制TLR4途径的活性化合物,然后使用回归和分类机器学习算法建立定量构效关系(QSAR)模型,以预测筛选出的化合物的生物活性。QSAR建模共使用了78个分子,这些分子是从ChEMBL数据库中检索到的。QSAR模型在训练集和测试集上的相关系数分别在0.96至0.91和0.93至0.76范围内,是可接受的。多类分类模型在训练数据和测试数据上的准确率分别在1.0至0.70、0.96至0.63范围内,对数损失范围分别为0.27至8.63。此外,还研究了分子描述符和指纹作为参与抑制活性增加和降低的结构元素。这些结果提供了适用于高通量筛选的QSAR和分类模型的定量分析,以及对TLR4拮抗剂抑制机制的见解。