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本文引用的文献

1
Metabolomics Profiling of Pituitary Adenomas by Raman Spectroscopy, Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy, and Mass Spectrometry of Serum Samples.基于血清样本的拉曼光谱、衰减全反射傅里叶变换红外光谱和质谱对垂体腺瘤的代谢组学分析。
Anal Chem. 2022 Aug 30;94(34):11898-11907. doi: 10.1021/acs.analchem.2c02487. Epub 2022 Aug 18.
2
Neutralization of the SARS-CoV-2 Omicron BA.1 and BA.2 Variants.严重急性呼吸综合征冠状病毒2型奥密克戎BA.1和BA.2变体的中和作用
N Engl J Med. 2022 Apr 21;386(16):1579-1580. doi: 10.1056/NEJMc2201849. Epub 2022 Mar 16.
3
Pathophysiological Response to SARS-CoV-2 Infection Detected by Infrared Spectroscopy Enables Rapid and Robust Saliva Screening for COVID-19.通过红外光谱检测到的对SARS-CoV-2感染的病理生理反应能够实现对COVID-19的快速且可靠的唾液筛查。
Biomedicines. 2022 Feb 1;10(2):351. doi: 10.3390/biomedicines10020351.
4
Diagnosing COVID-19 in human serum using Raman spectroscopy.使用拉曼光谱技术诊断人血清中的 COVID-19。
Lasers Med Sci. 2022 Jun;37(4):2217-2226. doi: 10.1007/s10103-021-03488-7. Epub 2022 Jan 14.
5
COVID-19 detection in X-ray images using convolutional neural networks.使用卷积神经网络在X射线图像中检测新冠病毒
Mach Learn Appl. 2021 Dec 15;6:100138. doi: 10.1016/j.mlwa.2021.100138. Epub 2021 Aug 20.
6
Rapid Classification of COVID-19 Severity by ATR-FTIR Spectroscopy of Plasma Samples.利用血浆样本的 ATR-FTIR 光谱对 COVID-19 严重程度进行快速分类。
Anal Chem. 2021 Aug 3;93(30):10391-10396. doi: 10.1021/acs.analchem.1c00596. Epub 2021 Jul 19.
7
On-Site Detection of SARS-CoV-2 Antigen by Deep Learning-Based Surface-Enhanced Raman Spectroscopy and Its Biochemical Foundations.基于深度学习的表面增强拉曼光谱法现场检测SARS-CoV-2抗原及其生化基础
Anal Chem. 2021 Jul 6;93(26):9174-9182. doi: 10.1021/acs.analchem.1c01061. Epub 2021 Jun 22.
8
An efficient primary screening of COVID-19 by serum Raman spectroscopy.通过血清拉曼光谱对新冠病毒进行高效初步筛查。
J Raman Spectrosc. 2021 May;52(5):949-958. doi: 10.1002/jrs.6080. Epub 2021 Feb 19.
9
Chest MRI of patients with COVID-19.COVID-19 患者的胸部 MRI。
Magn Reson Imaging. 2021 Jun;79:13-19. doi: 10.1016/j.mri.2021.03.005. Epub 2021 Mar 13.
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COVID-19 salivary Raman fingerprint: innovative approach for the detection of current and past SARS-CoV-2 infections.COVID-19 唾液拉曼指纹:用于检测当前和过去 SARS-CoV-2 感染的创新方法。
Sci Rep. 2021 Mar 2;11(1):4943. doi: 10.1038/s41598-021-84565-3.

利用共聚焦拉曼光谱对血浆样本进行新冠病毒严重程度分类。

SARS-CoV-2 severity classification from plasma sample using confocal Raman spectroscopy.

作者信息

Banerjee Arghya, Halder Ankit, Jadhav Priyanka, Sarkar Anushka, Hole Arti, Shastri Jayanthi S, Agrawal Sachee, Chilakapati Murali Krishna, Srivastava Sanjeeva

机构信息

Department of Biosciences and Bioengineering Indian Institute of Technology Bombay Mumbai India.

Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre (TMC) Navi Mumbai India.

出版信息

J Raman Spectrosc. 2023 Jan;54(1):124-132. doi: 10.1002/jrs.6461. Epub 2022 Oct 28.

DOI:10.1002/jrs.6461
PMID:36713977
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9874663/
Abstract

The world is on the brink of facing coronavirus's (COVID-19) fourth wave as the mutant forms of viruses are escaping neutralizing antibodies in spite of being vaccinated. As we have already witnessed that it has encumbered our health system, with hospitals swamped with infected patients observed during the viral outbreak. Rapid triage of patients infected with SARS-CoV-2 is required during hospitalization to prioritize and provide the best point of care. Traditional diagnostics techniques such as RT-PCR and clinical parameters such as symptoms, comorbidities, sex and age are not enough to identify the severity of patients. Here, we investigated the potential of confocal Raman microspectroscopy as a powerful tool to generate an expeditious blood-based test for the classification of COVID-19 disease severity using 65 patients plasma samples from cohorts infected with SARS-CoV-2. We designed an easy manageable blood test where we used a small volume (8 μl) of inactivated whole plasma samples from infected patients without any extra solvent usage in plasma processing. Raman spectra of plasma samples were acquired and multivariate exploratory analysis PC-LDA (principal component based linear discriminant analysis) was used to build a model, which segregated the severe from the non-severe COVID-19 group with a sensitivity of 83.87%, specificity of 70.60% and classification efficiency of 76.92%. Among the bands expressed in both the cohorts, the study led to the identification of Raman fingerprint regions corresponding to lipids (1661, 1742), proteins amide I and amide III (1555, 1247), proteins (Phe) (1006, 1034), and nucleic acids (760) to be differentially expressed in severe COVID-19 patient's samples. In summary, the current study exhibits the potential of confocal Raman to generate simple, rapid, and less expensive blood tests to triage the severity of patients infected with SARS-CoV-2.

摘要

尽管人们已经接种了疫苗,但病毒的变异形式仍能逃避中和抗体,世界正处于面临新冠病毒(COVID-19)第四波疫情的边缘。正如我们已经看到的,它给我们的卫生系统带来了负担,在病毒爆发期间,医院里挤满了感染患者。住院期间需要对感染严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的患者进行快速分诊,以便确定优先次序并提供最佳护理。传统的诊断技术,如逆转录聚合酶链反应(RT-PCR),以及临床参数,如症状、合并症、性别和年龄,不足以确定患者的严重程度。在此,我们研究了共聚焦拉曼光谱作为一种强大工具的潜力,该工具可利用65例感染SARS-CoV-2的队列患者的血浆样本,快速进行基于血液的检测,以对COVID-19疾病严重程度进行分类。我们设计了一种易于管理的血液检测方法,使用少量(8微升)来自感染患者的灭活全血浆样本,在血浆处理过程中无需使用任何额外溶剂。采集血浆样本的拉曼光谱,并使用多变量探索性分析主成分线性判别分析(PC-LDA)建立模型,该模型将重症COVID-19组与非重症组区分开来,灵敏度为83.87%,特异性为70.60%,分类效率为76.92%。在两个队列中均表达的谱带中,该研究确定了与脂质(1661、1742)、蛋白质酰胺I和酰胺III(1555、1247)、蛋白质(苯丙氨酸)(1006、1034)和核酸(760)相对应的拉曼指纹区域在重症COVID-19患者样本中差异表达。总之,当前研究显示了共聚焦拉曼光谱在生成简单、快速且成本较低的血液检测方法以分诊感染SARS-CoV-2患者严重程度方面的潜力。