Banerjee Arghya, Halder Ankit, Jadhav Priyanka, Sarkar Anushka, Hole Arti, Shastri Jayanthi S, Agrawal Sachee, Chilakapati Murali Krishna, Srivastava Sanjeeva
Department of Biosciences and Bioengineering Indian Institute of Technology Bombay Mumbai India.
Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre (TMC) Navi Mumbai India.
J Raman Spectrosc. 2023 Jan;54(1):124-132. doi: 10.1002/jrs.6461. Epub 2022 Oct 28.
The world is on the brink of facing coronavirus's (COVID-19) fourth wave as the mutant forms of viruses are escaping neutralizing antibodies in spite of being vaccinated. As we have already witnessed that it has encumbered our health system, with hospitals swamped with infected patients observed during the viral outbreak. Rapid triage of patients infected with SARS-CoV-2 is required during hospitalization to prioritize and provide the best point of care. Traditional diagnostics techniques such as RT-PCR and clinical parameters such as symptoms, comorbidities, sex and age are not enough to identify the severity of patients. Here, we investigated the potential of confocal Raman microspectroscopy as a powerful tool to generate an expeditious blood-based test for the classification of COVID-19 disease severity using 65 patients plasma samples from cohorts infected with SARS-CoV-2. We designed an easy manageable blood test where we used a small volume (8 μl) of inactivated whole plasma samples from infected patients without any extra solvent usage in plasma processing. Raman spectra of plasma samples were acquired and multivariate exploratory analysis PC-LDA (principal component based linear discriminant analysis) was used to build a model, which segregated the severe from the non-severe COVID-19 group with a sensitivity of 83.87%, specificity of 70.60% and classification efficiency of 76.92%. Among the bands expressed in both the cohorts, the study led to the identification of Raman fingerprint regions corresponding to lipids (1661, 1742), proteins amide I and amide III (1555, 1247), proteins (Phe) (1006, 1034), and nucleic acids (760) to be differentially expressed in severe COVID-19 patient's samples. In summary, the current study exhibits the potential of confocal Raman to generate simple, rapid, and less expensive blood tests to triage the severity of patients infected with SARS-CoV-2.
尽管人们已经接种了疫苗,但病毒的变异形式仍能逃避中和抗体,世界正处于面临新冠病毒(COVID-19)第四波疫情的边缘。正如我们已经看到的,它给我们的卫生系统带来了负担,在病毒爆发期间,医院里挤满了感染患者。住院期间需要对感染严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的患者进行快速分诊,以便确定优先次序并提供最佳护理。传统的诊断技术,如逆转录聚合酶链反应(RT-PCR),以及临床参数,如症状、合并症、性别和年龄,不足以确定患者的严重程度。在此,我们研究了共聚焦拉曼光谱作为一种强大工具的潜力,该工具可利用65例感染SARS-CoV-2的队列患者的血浆样本,快速进行基于血液的检测,以对COVID-19疾病严重程度进行分类。我们设计了一种易于管理的血液检测方法,使用少量(8微升)来自感染患者的灭活全血浆样本,在血浆处理过程中无需使用任何额外溶剂。采集血浆样本的拉曼光谱,并使用多变量探索性分析主成分线性判别分析(PC-LDA)建立模型,该模型将重症COVID-19组与非重症组区分开来,灵敏度为83.87%,特异性为70.60%,分类效率为76.92%。在两个队列中均表达的谱带中,该研究确定了与脂质(1661、1742)、蛋白质酰胺I和酰胺III(1555、1247)、蛋白质(苯丙氨酸)(1006、1034)和核酸(760)相对应的拉曼指纹区域在重症COVID-19患者样本中差异表达。总之,当前研究显示了共聚焦拉曼光谱在生成简单、快速且成本较低的血液检测方法以分诊感染SARS-CoV-2患者严重程度方面的潜力。