Gaikwad Ambika Baldev, Kaila Tanvi, Maurya Avantika, Kumari Ratna, Rangan Parimalan, Wankhede Dhammaprakash Pandhari, Bhat K V
Division of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Indian Council of Agricultural Research (ICAR)-National Institute for Plant Biotechnology, New Delhi, India.
Front Plant Sci. 2023 Jan 12;13:1095781. doi: 10.3389/fpls.2022.1095781. eCollection 2022.
, also known as black pepper, is an economically and ecologically important crop of the genus . It has been titled as the king of spices due to its wide consumption throughout the world. In the present investigation, the chloroplast genome of has been assembled from a whole genome sequence by integrating the short and long reads generated through Illumina and PacBio platforms, respectively. The chloroplast genome was observed to be 161,522 bp in size, having a quadripartite structure with a large single copy (LSC) region of 89,153 bp and a small single copy (SSC) region of 18,255 bp separated by a copy of inverted repeats (IRs), each 27,057 bp in length. Taking into consideration all the duplicated genes, a total of 131 genes were observed, which included 81 protein-coding genes, 37 tRNAs, 4 rRNAs, and 1 pseudogene. Individually, the LSC region consisted of 83 genes, the SSC region had 13 genes, and 18 genes were present in each IR region. Additionally, 216 SSRs were detected and 11 of these were validated through amplification in 12 species of . The features of the chloroplast genome have been compared with those of the genus . Our results provide useful insights into evolutionary and molecular studies of black pepper which will contribute to its further genetic improvement and breeding.
[作物名称],也被称为黑胡椒,是[所属属名]属一种在经济和生态方面都很重要的作物。由于其在全球范围内的广泛消费,它被誉为香料之王。在本研究中,[作物名称]的叶绿体基因组已通过整合分别由Illumina和PacBio平台产生的短读长和长读长从全基因组序列中组装而成。观察到叶绿体基因组大小为161,522 bp,具有四分体结构,一个89,153 bp的大单拷贝(LSC)区域和一个18,255 bp的小单拷贝(SSC)区域,由两个长度均为27,057 bp的反向重复序列(IRs)拷贝隔开。考虑到所有重复基因,共观察到131个基因,其中包括81个蛋白质编码基因、37个tRNA、4个rRNA和1个假基因。具体而言,LSC区域由83个基因组成,SSC区域有13个基因,每个IR区域有18个基因。此外,检测到216个简单序列重复(SSR),其中11个通过在12种[相关物种名称]中的扩增得到验证。已将叶绿体基因组的特征与[所属属名]属的特征进行了比较。我们的结果为黑胡椒的进化和分子研究提供了有用的见解,这将有助于其进一步的遗传改良和育种。