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瓜尔豆(Cyamopsis tetragonoloba L.)叶绿体基因组序列:基因组结构与比较分析

Chloroplast Genome Sequence of Clusterbean (Cyamopsis tetragonoloba L.): Genome Structure and Comparative Analysis.

作者信息

Kaila Tanvi, Chaduvla Pavan K, Rawal Hukam C, Saxena Swati, Tyagi Anshika, Mithra S V Amitha, Solanke Amolkumar U, Kalia Pritam, Sharma T R, Singh N K, Gaikwad Kishor

机构信息

ICAR-National Research Centre on Plant Biotechnology, New Delhi 110012, India.

Division of Vegetable Sciences, Indian Agricultural Research Institute, Pusa, New Delhi 110012, India.

出版信息

Genes (Basel). 2017 Sep 19;8(9):212. doi: 10.3390/genes8090212.

Abstract

Clusterbean ( L.), also known as guar, belongs to the family Leguminosae, and is an annual herbaceous legume. Guar is the main source of galactomannan for gas mining industries. In the present study, the draft chloroplast genome of clusterbean was generated and compared to some of the previously reported legume chloroplast genomes. The chloroplast genome of clusterbean is 152,530 bp in length, with a quadripartite structure consisting of large single copy (LSC) and small single copy (SSC) of 83,025 bp and 17,879 bp in size, respectively, and a pair of inverted repeats (IRs) of 25,790 bp in size. The chloroplast genome contains 114 unique genes, which includes 78 protein coding genes, 30 tRNAs, 4 rRNAs genes, and 2 pseudogenes. It also harbors a 50 kb inversion, typical of the Leguminosae family. The IR region of the clusterbean chloroplast genome has undergone an expansion, and hence, the whole gene is included in the IR, as compared to other legume plastid genomes. A total of 220 simple sequence repeats (SSRs) were detected in the clusterbean plastid genome. The analysis of the clusterbean plastid genome will provide useful insights for evolutionary, molecular and genetic engineering studies.

摘要

瓜尔豆(L.),也称为瓜尔胶豆,属于豆科,是一种一年生草本豆科植物。瓜尔豆是天然气开采行业半乳甘露聚糖的主要来源。在本研究中,生成了瓜尔豆的叶绿体基因组草图,并与一些先前报道的豆科植物叶绿体基因组进行了比较。瓜尔豆的叶绿体基因组长度为152,530 bp,具有四分体结构,由大小分别为83,025 bp和17,879 bp的大单拷贝(LSC)和小单拷贝(SSC)以及一对大小为25,790 bp的反向重复序列(IR)组成。叶绿体基因组包含114个独特基因,其中包括78个蛋白质编码基因、30个tRNA、4个rRNA基因和2个假基因。它还存在一个50 kb的倒位,这是豆科家族的典型特征。与其他豆科植物质体基因组相比,瓜尔豆叶绿体基因组的IR区域发生了扩展,因此整个基因都包含在IR中。在瓜尔豆质体基因组中总共检测到220个简单序列重复(SSR)。瓜尔豆质体基因组的分析将为进化、分子和基因工程研究提供有用的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54e4/5615346/06768e355de0/genes-08-00212-g001.jpg

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