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水溶液中伯克霍尔德氏菌 C1576 多糖的二糖键的均方力构象能图谱的潜力。

Potential of mean force conformational energy maps for disaccharide linkages of the Burkholderia multivorans exopolysaccharide C1576 in aqueous solution.

机构信息

Department of Food Science, Cornell University, Ithaca, NY, 14853, USA.

Department of Food Science, Cornell University, Ithaca, NY, 14853, USA.

出版信息

Carbohydr Res. 2023 Feb;524:108741. doi: 10.1016/j.carres.2023.108741. Epub 2023 Jan 18.

DOI:10.1016/j.carres.2023.108741
PMID:36716692
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9974804/
Abstract

Potential of Mean Force Ramachandran energy maps in aqueous solution have been prepared for all of the glycosidic linkages found in the C1576 exopolysaccharide from the biofilms of the bacterial species Burkholderia multivorans, a member of the Burkholderia cepacian complex that was isolated from a cystic fibrosis patient. C1576 is a rhamnomannan with a tetrasaccharide repeat unit. In general, for the four linkage types in this polymer, hydration did not produce dramatic changes in the Ramachandran energy surfaces, with the 3-methyl-α-d-rhamnopyranose-(1→3)-α-d-rhamnopyranose case exhibiting the greatest hydration change, with the global minimum energy conformation shifting by more than 80° in ψ. However, hydration did reduce the rigidity of all the linkages, increasing the overall flexibility of this polysaccharide.

摘要

已为伯克霍尔德氏菌复合群成员、源自囊性纤维化患者的鲍氏不动杆菌生物膜中分离出的 C1576 胞外多糖的所有糖苷键制备了在水溶液中的均方根力拉马钱丹能图谱。C1576 是一种带有四糖重复单元的鼠李半乳聚糖。一般来说,对于该聚合物中的四种键型,水合作用并没有使拉马钱丹能表面产生显著变化,在 3-甲基-α-d-鼠李吡喃糖基-(1→3)-α-d-鼠李吡喃糖基情况下,水合作用变化最大,全局最低能量构象在 ψ 处的移动超过 80°。然而,水合作用确实降低了所有键的刚性,增加了该多糖的整体灵活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/8c21f8bcc374/nihms-1870445-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/7bb557c6bfc3/nihms-1870445-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/8ac5e66fae49/nihms-1870445-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/33d2aba08461/nihms-1870445-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/522450fb7d95/nihms-1870445-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/f0209c9cd412/nihms-1870445-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/e2ff49c9a3b5/nihms-1870445-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/8c21f8bcc374/nihms-1870445-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/7bb557c6bfc3/nihms-1870445-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/8ac5e66fae49/nihms-1870445-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/33d2aba08461/nihms-1870445-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/522450fb7d95/nihms-1870445-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/f0209c9cd412/nihms-1870445-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/e2ff49c9a3b5/nihms-1870445-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/9974804/8c21f8bcc374/nihms-1870445-f0008.jpg

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本文引用的文献

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Int J Biol Macromol. 2020 Jan 15;143:501-509. doi: 10.1016/j.ijbiomac.2019.11.037. Epub 2019 Nov 28.
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The polysaccharide extracted from the biofilm of Burkholderia multivorans strain C1576 binds hydrophobic species and exhibits a compact 3D-structure.从伯克霍尔德氏菌 C1576 菌株生物膜中提取的多糖可与疏水性物质结合,并呈现出紧密的 3D 结构。
Int J Biol Macromol. 2019 Sep 1;136:944-950. doi: 10.1016/j.ijbiomac.2019.06.140. Epub 2019 Jun 20.
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