Gruber Balázs, Czakó Gábor
MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
Phys Chem Chem Phys. 2023 Feb 8;25(6):5271-5281. doi: 10.1039/d2cp03049g.
We perform a systematic search in the transition-state (TS) and product-channel complex (MIN) regions of the multi-channel OH + glycine → HO + HN-CH-COOH (CH)/HN-CH-COOH (NH)/HN-CH-COO (COOH) reactions. Geometry optimizations reveal {7, 3, 3} CH-TS, {2, 2, 2} CH-MIN, {17, 10, 5} NH-TS, {35, 19, 19} NH-MIN, and {6, 5, 5} COOH-TS conformers at the {MP2/3-21G, MP2/aug-cc-pVDZ, CCSD(T)-F12b/aug-cc-pVDZ} levels of theory as well as 2 additional CH-TSs based on chemical intuition. The benchmark relative energies of the TS, MIN, and product conformers are obtained by considering basis set effects up to aug-cc-pVQZ using the explicitly-correlated CCSD(T)-F12b method, post-(T) correlation up to CCSDT(Q), core correlation, scalar relativistic effects, spin-orbit coupling, and zero-point energy corrections. All the CH [Δ(Δ) = -38.54(-38.61) kcal mol], NH [Δ(Δ) = -16.72(-17.98) kcal mol], and COOH [Δ = -4.98 kcal mol] reactions are exothermic and proceed shallow, usually negative, classical(adiabatic) barriers of -0.37(-0.95), -1.91(-2.48), and 1.02(-0.57) kcal mol, respectively. In the entrance channel MRCI/aug-cc-pVTZ computations reveal several complexes with reactive(non-reactive) arrangements and binding energies of 1.0, 1.6, 3.3, (5.2 and 5.9) kcal mol, stabilized by CH⋯OH, NH⋯OH, COOH⋯OH, (OH⋯OC and OH⋯N) hydrogen bonds, respectively.
我们对多通道反应OH + 甘氨酸→ HO + HN-CH-COOH (CH)/HN-CH-COOH (NH)/HN-CH-COO (COOH)的过渡态(TS)和产物通道复合物(MIN)区域进行了系统搜索。几何优化在{MP2/3 - 21G、MP2/aug - cc - pVDZ、CCSD(T)-F12b/aug - cc - pVDZ}理论水平上揭示了{7, 3, 3} CH - TS、{2, 2, 2} CH - MIN、{17, 10, 5} NH - TS、{35, 19, 19} NH - MIN和{6, 5, 5} COOH - TS构象异构体,以及基于化学直觉的另外2个CH - TS。通过使用显式相关的CCSD(T)-F12b方法考虑高达aug - cc - pVQZ的基组效应、高达CCSDT(Q)的后(T)相关、核心相关、标量相对论效应、自旋 - 轨道耦合和零点能校正,获得了TS、MIN和产物构象异构体的基准相对能量。所有的CH [Δ(Δ) = -38.54(-38.61) kcal mol]、NH [Δ(Δ) = -16.72(-17.98) kcal mol]和COOH [Δ = -4.98 kcal mol]反应都是放热的,并且分别以-0.37(-0.95)、-1.91(-2.48)和1.02(-0.57) kcal mol的浅的、通常为负的经典(绝热)势垒进行。在入口通道中,MRCI/aug - cc - pVTZ计算揭示了几种具有反应性(非反应性)排列且结合能分别为1.0、1.6、3.3、(5.2和5.9) kcal mol的复合物,它们分别通过CH⋯OH、NH⋯OH、COOH⋯OH、(OH⋯OC和OH⋯N)氢键稳定。