Scuola Normale Superiore di Pisa, piazza dei Cavalieri 7, 56126 Pisa, Italy.
DMMT-sede Europa, Universitá di Brescia, viale Europa 11, 25121 Brescia, Italy.
J Chem Theory Comput. 2023 Feb 28;19(4):1243-1260. doi: 10.1021/acs.jctc.2c01143. Epub 2023 Feb 2.
The accurate characterization of prototypical bricks of life can strongly benefit from the integration of high resolution spectroscopy and quantum mechanical computations. We have selected a number of representative amino acids (glycine, alanine, serine, cysteine, threonine, aspartic acid and asparagine) to validate a new computational setup rooted in quantum-chemical computations of increasing accuracy guided by machine learning tools. Together with low-lying energy minima, the barriers ruling their interconversion are evaluated in order to unravel possible fast relaxation paths. Vibrational and thermal effects are also included in order to estimate relative free energies at the temperature of interest in the experiment. The spectroscopic parameters of all the most stable conformers predicted by this computational strategy, which do not have low-energy relaxation paths available, closely match those of the species detected in microwave experiments. Together with their intrinsic interest, these accurate results represent ideal benchmarks for more approximate methods.
准确描述生命的原型砖可以从高分辨率光谱学和量子力学计算的整合中受益。我们选择了一些有代表性的氨基酸(甘氨酸、丙氨酸、丝氨酸、半胱氨酸、苏氨酸、天冬氨酸和天冬酰胺),以验证一种新的计算方法,该方法基于机器学习工具指导的不断提高准确性的量子化学计算。除了低能最低点之外,还评估了控制它们相互转化的障碍,以揭示可能的快速松弛途径。还包括振动和热效应,以估计在实验感兴趣的温度下的相对自由能。通过这种计算策略预测的所有最稳定构象的光谱参数,它们没有低能弛豫途径,与在微波实验中检测到的物质非常匹配。除了它们的内在兴趣之外,这些准确的结果还代表了更近似方法的理想基准。