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准确度与可行性兼顾:生命分子积木的结构和转动常数——DFT 和波函数方法的联合研究。

Accuracy Meets Feasibility for the Structures and Rotational Constants of the Molecular Bricks of Life: A Joint Venture of DFT and Wave-Function Methods.

机构信息

Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy.

出版信息

J Phys Chem Lett. 2023 Jun 29;14(25):5883-5890. doi: 10.1021/acs.jpclett.3c01380. Epub 2023 Jun 21.

DOI:10.1021/acs.jpclett.3c01380
PMID:37342967
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10316392/
Abstract

A fully unsupervised computational protocol is proposed with the aim of obtaining reliable structural properties for molecular bricks of life in the gas phase. The results of the new composite scheme approach spectroscopic accuracy at a moderate cost without any empirical parameter in addition to those of the underlying electronic structure method. The whole workflow is fully automated and provides optimized geometries and equilibrium rotational constants. Direct comparison with experimental ground state rotational constants can be performed thanks to the effective computation of vibrational corrections in the framework of second-order vibrational perturbation theory. The results for all the nucleic acid bases and several flexible molecules of biological or medicinal interest show that the accuracy of the new tool is close to that delivered by state-of-the-art composite wave function methods for small semirigid molecules.

摘要

提出了一种完全无监督的计算方案,旨在获得气相中生命分子砌块的可靠结构性质。新的复合方案方法的结果以适中的成本达到了光谱精度,除了基础电子结构方法之外,没有任何经验参数。整个工作流程完全自动化,并提供优化的几何形状和平衡旋转常数。由于在二级振动微扰理论框架内有效地计算了振动修正,因此可以直接与实验基态旋转常数进行比较。对于所有核酸碱基和几种具有生物或医学意义的柔性分子的结果表明,新工具的准确性接近最先进的小半刚性分子复合波函数方法提供的准确性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/25d5d02fcd1f/jz3c01380_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/aea9b1a63fd9/jz3c01380_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/efa2af956d79/jz3c01380_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/25d5d02fcd1f/jz3c01380_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/aea9b1a63fd9/jz3c01380_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/efa2af956d79/jz3c01380_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8433/10316392/25d5d02fcd1f/jz3c01380_0003.jpg

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