Department of Chemistry, Yildiz Technical University, 34220, Istanbul, Turkey.
J Mol Model. 2023 Feb 4;29(3):63. doi: 10.1007/s00894-023-05462-2.
Ampicillin (AMP) is a penicillin-class beta-lactam antibiotic widely used to treat infections caused by bacteria. Therefore, due to its widespread use, this antibiotic is found in wastewater, and it contains long-term risks such as toxicity to all living organisms.
In this study, the degradation reaction of ampicillin with hydroxyl radical was investigated by the density functional theory (DFT) method. All the calculations were performed with B3LYP functional at 6-31G(d,p) basis set.
The thermodynamic energy values and reaction rates of all possible reaction paths were calculated. The addition of the hydroxyl radical to the carbonyl group of the beta-lactam ring is thermodynamically the most probable reaction path. The calculated overall reaction rate constant is 1.36 × 10 M s. To determine the effect of temperature on the reaction rate, rate constants were calculated for all reaction paths at five different temperatures. The subsequent reaction kinetics of the most preferred primary route was also examined, and the toxicity values of the intermediates were estimated. The acute toxicity of AMP and its degradation product were calculated using the Ecological Structure Activity Relationships (ECOSAR) software. The degradation product was found to be more toxic than AMP.
氨苄西林(AMP)是一种广泛用于治疗细菌感染的青霉素类β-内酰胺抗生素。因此,由于其广泛使用,这种抗生素存在于废水中,并且含有对所有生物体的毒性等长期风险。
本研究采用密度泛函理论(DFT)方法研究了羟自由基与氨苄西林的降解反应。所有计算均在 B3LYP 函数和 6-31G(d,p)基组下进行。
计算了所有可能反应路径的热力学能量值和反应速率。羟自由基加成到β-内酰胺环的羰基是最可能的热力学反应路径。计算得到的总反应速率常数为 1.36×10M s。为了确定温度对反应速率的影响,在五个不同温度下计算了所有反应路径的速率常数。还检查了最优选的主要途径的后续反应动力学,并估计了中间体的毒性值。使用生态结构活性关系(ECOSAR)软件计算了 AMP 及其降解产物的急性毒性。降解产物被发现比 AMP 更具毒性。