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pyroptosis 相关特征可预测溃疡性结肠炎和结肠炎相关结直肠癌的进展以及抗 TNF 治疗反应。

Pyroptosis-Related Signature Predicts the Progression of Ulcerative Colitis and Colitis-Associated Colorectal Cancer as well as the Anti-TNF Therapeutic Response.

机构信息

Department of Gastroenterology, Zhongnan Hospital of Wuhan University, Wuhan, China.

Hubei Clinical Center and Key Lab of Intestinal and Colorectal Diseases, Wuhan, China.

出版信息

J Immunol Res. 2023 Jan 27;2023:7040113. doi: 10.1155/2023/7040113. eCollection 2023.


DOI:10.1155/2023/7040113
PMID:36741232
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9897931/
Abstract

Ulcerative colitis (UC) is a complex intestinal inflammation with an increasing risk of colitis-associated colorectal cancer (CAC). However, the pathogenesis is still unclear between active UC and inactive UC. Recently, it has been reported that pyroptosis-related genes (PRGs) are closely associated with inflammatory disease activity. Nevertheless, the specific roles of PRGs in the progression and treatment of UC and CAC remain unclear. In this study, we identified 30 differentially expressed PRGs based on the immune landscape of active and inactive UC samples. Meanwhile, weighted gene coexpression network analysis was applied to explore important genes associated with active UC. By intersecting with the differentially expressed PRGs, CASP5, GBP1, GZMB, IL1B, and IRF1 were selected as key PRGs to construct a pyroptosis-related signature (PR-signature). Then, logistic regression analysis was performed to validate the PR-signature and establish a pyroptosis-related score (PR-Score). We demonstrated that PR-Score had a powerful ability to distinguish active UC from inactive UC in multiple datasets. Besides, PR-Score was positively correlated with immune cell infiltration and inflammatory microenvironment in UC. Lower PR-Score was associated with a better response to anti-TNF therapy for patients with UC. Additionally, high-PR-Score was found to suppress CAC and improve the survival outcomes of patients with colorectal cancer. Finally, the levels of the PR-signature genes were validated both in vitro and in vivo. These findings can improve our understanding of PRGs in UC and provide new markers for predicting the occurrence of active UC or CAC and the treatment of UC.

摘要

溃疡性结肠炎(UC)是一种复杂的肠道炎症,其结直肠癌(CAC)的发病风险增加。然而,活动期 UC 和非活动期 UC 之间的发病机制仍不清楚。最近,有报道称细胞焦亡相关基因(PRGs)与炎症性疾病的活动密切相关。然而,PRGs 在 UC 和 CAC 的进展和治疗中的具体作用仍不清楚。在本研究中,我们基于活动期和非活动期 UC 样本的免疫图谱鉴定了 30 个差异表达的 PRGs。同时,应用加权基因共表达网络分析来探索与活动期 UC 相关的重要基因。通过与差异表达的 PRGs 相交,选择 CASP5、GBP1、GZMB、IL1B 和 IRF1 作为关键 PRGs 来构建细胞焦亡相关特征(PR 特征)。然后,进行逻辑回归分析来验证 PR 特征并建立细胞焦亡相关评分(PR-Score)。我们证明 PR-Score 能够在多个数据集区分活动期 UC 和非活动期 UC。此外,PR-Score 与 UC 中的免疫细胞浸润和炎症微环境呈正相关。较低的 PR-Score 与 UC 患者对 TNF 治疗的反应更好相关。此外,高 PR-Score 可抑制 CAC 并改善结直肠癌患者的生存结局。最后,在体外和体内验证了 PR 特征基因的水平。这些发现可以提高我们对 UC 中 PRGs 的认识,并为预测活动期 UC 或 CAC 的发生以及 UC 的治疗提供新的标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/c9b45e6a4f3a/JIR2023-7040113.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/6867e73bef78/JIR2023-7040113.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/71de865480fe/JIR2023-7040113.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/3b5fa63af7b8/JIR2023-7040113.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/f849ec1266f2/JIR2023-7040113.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/38f500eeb9ae/JIR2023-7040113.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/81a1b713c616/JIR2023-7040113.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/11e638b00c60/JIR2023-7040113.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/c9b45e6a4f3a/JIR2023-7040113.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/6867e73bef78/JIR2023-7040113.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/71de865480fe/JIR2023-7040113.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/3b5fa63af7b8/JIR2023-7040113.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/f849ec1266f2/JIR2023-7040113.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/38f500eeb9ae/JIR2023-7040113.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/81a1b713c616/JIR2023-7040113.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/11e638b00c60/JIR2023-7040113.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebaa/9897931/c9b45e6a4f3a/JIR2023-7040113.008.jpg

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[3]
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[5]
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[6]
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本文引用的文献

[1]
A novel mechanism for macrophage pyroptosis in rheumatoid arthritis induced by Pol β deficiency.

Cell Death Dis. 2022-7-6

[2]
The Mayo Endoscopic Score Is a Novel Predictive Indicator for Malignant Transformation in Ulcerative Colitis: A Long-Term Follow-Up Multicenter Study.

Front Surg. 2022-3-16

[3]
A novel pyroptosis-related signature predicts prognosis and response to treatment in breast carcinoma.

Aging (Albany NY). 2022-1-27

[4]
Cell Death in Hepatocellular Carcinoma: Pathogenesis and Therapeutic Opportunities.

Cancers (Basel). 2021-12-23

[5]
GSDMD-mediated pyroptosis: a critical mechanism of diabetic nephropathy.

Expert Rev Mol Med. 2021-12-27

[6]
Predicting the Prognosis of Esophageal Adenocarcinoma by a Pyroptosis-Related Gene Signature.

Front Pharmacol. 2021-11-18

[7]
Predicting the prognosis of glioma by pyroptosis-related signature.

J Cell Mol Med. 2022-1

[8]
Identification of pyroptosis-related subtypes, the development of a prognosis model, and characterization of tumor microenvironment infiltration in colorectal cancer.

Oncoimmunology. 2021

[9]
Silencing GS Homeobox 2 Alleviates Gemcitabine Resistance in Pancreatic Cancer Cells by Activating SHH/GLI1 Signaling Pathway.

Dig Dis Sci. 2022-8

[10]
Colonic Epithelial PHLPP2 Deficiency Promotes Colonic Epithelial Pyroptosis by Activating the NF-B Signaling Pathway.

Oxid Med Cell Longev. 2021

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