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YAP介导的膀胱重塑中的机械转导:基于RNA测序和CUT&Tag技术

YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag.

作者信息

Di Xingpeng, Xiang Liyuan, Jian Zhongyu

机构信息

Department of Urology, Institute of Urology (Laboratory of Reconstructive Urology), West China Hospital, Sichuan University, Chengdu, Sichuan, China.

Department of Clinical Research Management, West China Hospital, Sichuan University, Chengdu, Sichuan, China.

出版信息

Front Genet. 2023 Jan 20;14:1106927. doi: 10.3389/fgene.2023.1106927. eCollection 2023.

Abstract

Yes-associated protein (YAP) is an important transcriptional coactivator binding to transcriptional factors that engage in many downstream gene transcription. Partial bladder outlet obstruction (pBOO) causes a massive burden to patients and finally leads to bladder fibrosis. Several cell types engage in the pBOO pathological process, including urothelial cells, smooth muscle cells, and fibroblasts. To clarify the function of YAP in bladder fibrosis, we performed the RNA-seq and CUT&Tag of the bladder smooth muscle cell to analyze the YAP ablation of human bladder smooth muscle cells (hBdSMCs) and immunoprecipitation of YAP. 141 differentially expressed genes (DEGs) were identified through RNA-seq between YAP-knockdown and nature control. After matching with the results of CUT&Tag, 36 genes were regulated directly by YAP. Then we identified the hub genes in the DEGs, including CDCA5, CENPA, DTL, NCAPH, and NEIL3, that contribute to cell proliferation. Thus, our study provides a regulatory network of YAP in smooth muscle proliferation. The possible effects of YAP on hBdSMC might be a vital target for pBOO-associated bladder fibrosis.

摘要

Yes相关蛋白(YAP)是一种重要的转录共激活因子,可与参与许多下游基因转录的转录因子结合。部分膀胱出口梗阻(pBOO)给患者带来巨大负担,最终导致膀胱纤维化。几种细胞类型参与了pBOO的病理过程,包括尿路上皮细胞、平滑肌细胞和成纤维细胞。为了阐明YAP在膀胱纤维化中的作用,我们对膀胱平滑肌细胞进行了RNA测序和CUT&Tag分析,以分析人膀胱平滑肌细胞(hBdSMCs)中YAP的缺失情况以及YAP的免疫沉淀。通过RNA测序,在YAP敲低组和野生型对照组之间鉴定出141个差异表达基因(DEGs)。与CUT&Tag结果匹配后,有36个基因受到YAP的直接调控。然后我们在DEGs中鉴定出了包括CDCA5、CENPA、DTL、NCAPH和NEIL3在内的关键基因,这些基因有助于细胞增殖。因此,我们的研究提供了YAP在平滑肌增殖中的调控网络。YAP对hBdSMC的潜在影响可能是pBOO相关膀胱纤维化的一个重要靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3365/9895788/f37f7fa33526/fgene-14-1106927-g001.jpg

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