Choi Alexander A, Xiang Limin, Li Wan, Xu Ke
bioRxiv. 2023 Jan 26:2023.01.26.525579. doi: 10.1101/2023.01.26.525579.
While fundamentally important, the intracellular diffusion of small (<~1 kDa) solutes has been difficult to elucidate due to challenges in both labeling and measurement. Here we quantify and spatially map the translational diffusion patterns of small solutes in mammalian cells by integrating several recent advances. In particular, by executing tandem stroboscopic illumination pulses down to 400-μs separation, we extend single-molecule displacement/diffusivity mapping (SM M), a super-resolution diffusion quantification tool, to small solutes with high diffusion coefficients of >300 μm /s. We thus show that for multiple water-soluble dyes and dye-tagged nucleotides, intracellular diffusion is dominated by vast regions of high diffusivity ~60-70% of that , up to ~250 μm /s in the fastest cases. Meanwhile, we also visualize sub-micrometer foci of substantial slowdowns in diffusion, thus underscoring the importance of spatially resolving the local diffusion behavior. Together, these results suggest that the intracellular diffusion of small solutes is only modestly scaled down by the slightly higher viscosity of the cytosol over water, but otherwise not further hindered by macromolecular crowding. We thus lift a paradoxically low speed limit for intracellular diffusion suggested by previous experiments.
虽然至关重要,但由于标记和测量方面的挑战,小分子(<1 kDa)溶质的细胞内扩散一直难以阐明。在此,我们通过整合多项最新进展,对哺乳动物细胞中小溶质的平移扩散模式进行了量化和空间映射。具体而言,通过执行间隔低至400微秒的串联频闪照明脉冲,我们将单分子位移/扩散率映射(SMM)这一超分辨率扩散量化工具扩展到了扩散系数>300μm²/s的小溶质。我们由此表明,对于多种水溶性染料和染料标记的核苷酸,细胞内扩散主要由高扩散率的广大区域主导,在最快的情况下,扩散率可达60 - 70%,高达~250μm²/s。同时,我们还可视化了扩散显著减慢的亚微米级焦点,从而强调了在空间上解析局部扩散行为的重要性。总之,这些结果表明,小溶质的细胞内扩散仅因胞质溶胶相对于水略高的粘度而略有降低,但除此之外并未受到大分子拥挤的进一步阻碍。我们因此打破了先前实验所暗示的细胞内扩散异常低的速度限制。