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新种,一种从处理厌氧污泥的实验室规模产甲烷垃圾填埋场生物反应器中分离出的嗜温、非芽孢形成细菌,以及对该属的修订,以纳入非芽孢形成和嗜温的物种。

sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus to include species which are non-spore-forming and mesophilic.

作者信息

El Houari Abdelaziz, Carpenter Morgan, Chaplin Daniel, Golyshin Peter, McDonald James E

机构信息

School of Natural Sciences, Environment Center Wales, Bangor University, UK.

Centre for Environmental Biotechnology (CEB), Bangor University, UK.

出版信息

Int J Syst Evol Microbiol. 2023 Feb;73(1). doi: 10.1099/ijsem.0.005683.

Abstract

A novel anaerobic, mesophilic, non-spore-forming bacterium (strain m25) was isolated from methanogenic enrichment cultures obtained from a lab-scale methanogenic landfill bioreactor containing anaerobic digester sludge. Cells were Gram-stain-negative, catalase-positive, oxidase-negative, rod-shaped, and motile by means of a flagellum. The genomic DNA G+C content was 40.11 mol%. The optimal NaCl concentration, temperature and pH for growth were 2.5 g l, 35 °C and at pH 7.0, respectively. Strain m25 was able to grow in the absence of yeast extract on glycerol, pyruvate, arginine and cysteine. In the presence of 0.2 % yeast extract, strain m25 grew on carbohydrates and was able to use glucose, cellobiose, fructose, raffinose and galactose. The novel strain could utilize glycerol, urea, pyruvate, peptone and tryptone. The major fatty acids were iso-C, C, C DMA (dimethyl acetal) and iso-C DMA. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the new isolate was closely related to EBR46 (95.02 % 16S rRNA gene sequence similarity). Genome relatedness was determined using both average nucleotide identity and amino acid identity analyses, the results of which both strongly supported that strain m25 belongs to the genus . Based on its unique phylogenetic features, strain m25 is considered to represent a novel species within the genus . Moreover, based on its unique physiologic features, mainly the lack of spore formation, a proposal to amend the genus is also provided to include the non-spore-forming and mesophilic species. sp. nov. is proposed. The type strain of the species is m25 (=DSM 112749=ATCC TSD-268).

摘要

从一个含有厌氧消化污泥的实验室规模的产甲烷垃圾填埋生物反应器中获得的产甲烷富集培养物中,分离出一种新型厌氧、嗜温、无芽孢形成细菌(菌株m25)。细胞革兰氏染色阴性,过氧化氢酶阳性,氧化酶阴性,杆状,通过鞭毛运动。基因组DNA的G+C含量为40.11摩尔%。生长的最佳NaCl浓度、温度和pH分别为2.5 g/L、35°C和pH 7.0。菌株m25在无酵母提取物的情况下能够在甘油、丙酮酸、精氨酸和半胱氨酸上生长。在存在0.2%酵母提取物的情况下,菌株m25能在碳水化合物上生长,并能够利用葡萄糖、纤维二糖、果糖、棉子糖和半乳糖。该新型菌株能够利用甘油、尿素、丙酮酸、蛋白胨和胰蛋白胨。主要脂肪酸为异-C、C、C DMA(二甲基缩醛)和异-C DMA。基于16S rRNA基因序列的系统发育分析表明,新分离株与EBR46密切相关(16S rRNA基因序列相似性为95.02%)。使用平均核苷酸同一性和氨基酸同一性分析确定基因组相关性,结果均有力支持菌株m25属于该属。基于其独特的系统发育特征,菌株m25被认为代表该属内的一个新物种。此外,基于其独特的生理特征,主要是缺乏芽孢形成,还提出了修订该属的建议,以包括无芽孢形成的嗜温物种。提出了新种。该物种的模式菌株是m25(=DSM 112749=ATCC TSD-268)。

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