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系统发育基因组学评估促使人们认识到Serianthes分支,并确认了其单系性以及它在更广泛的云实属分支(豆科,苏木亚科)中与[具体属名未给出]和[具体属名未给出]的关系。

Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of and its relationship with and in the wider ingoid clade (Leguminosae, Caesalpinioideae).

作者信息

Demeulenaere Else, Schils Tom, Burleigh J Gordon, Ringelberg Jens J, Koenen Erik J M, Ickert-Bond Stefanie M

机构信息

Center for Island Sustainability, University of Guam, UOG Station, Mangilao, 96923, Guam.

Marine Laboratory, University of Guam, UOG Station, Mangilao, 96923, Guam.

出版信息

PhytoKeys. 2022 Aug 22;205:335-361. doi: 10.3897/phytokeys.205.79144. eCollection 2022.

Abstract

The Indo-Pacific legume genus was recently placed in the Archidendron clade (sensu Koenen et al. 2020), a subclade of the mimosoid clade in subfamily Caesalpinioideae, which also includes , , , , , and . comprises ca. 18 species, five subspecies and two varieties that are characterised by bipinnately compound leaves with alternate sessile leaflets, branched axillary corymbiform panicles and woody indehiscent pods. Generic relationships, as well as species relationships within genera in the Archidendron clade, remain uncertain. While the sister relationship between and the genus is strongly supported by molecular data, the distinction between and the monotypic genus has been questioned, based on their similar flower and fruit morphologies. We combined three gene-enriched hybrid capture DNA sequence datasets (generated from the 964 mimobaits v1 probe set, the expanded 997 mimobaits v2 probe set and the GoFlag angiosperm 408 probe set) and used their overlapping markers (77 loci of the target exonic and flanking regions) to test the monophyly of and to investigate generic relationships within the Archidendron clade using 55 ingoid plus two outgroup taxa. We show that is monophyletic, confirm the + sister relationship to and recognise this combined clade as the Serianthes clade within the Archidendron clade. We also evaluated the use of overlapping loci across datasets in combination with concordance analyses to test generic relationships and further investigate previously unresolved relationships across the wider ingoid clade. Concordance analysis revealed limited gene tree conflicts near the tips of the Archidendron clade, but increased discordance at the base of the clade, which could be attributed to rapid lineage divergence (radiation) and/or incomplete lineage sorting.

摘要

印度洋 - 太平洋豆科属最近被归入Archidendron分支(根据Koenen等人2020年的定义),它是苏木亚科含羞草分支的一个亚分支,该亚分支还包括 、 、 、 、 、 和 。 包含约18个物种、5个亚种和2个变种,其特征是具有互生无柄小叶的二回羽状复叶、分枝的腋生伞房状圆锥花序和木质不开裂的荚果。Archidendron分支内各属之间的关系以及属内物种间的关系仍不确定。虽然分子数据强烈支持 和 属之间的姐妹关系,但基于它们相似的花和果实形态, 与单型属 的区分受到了质疑。我们合并了三个基因富集的杂交捕获DNA序列数据集(由964个含羞草诱饵v1探针组、扩展的997个含羞草诱饵v2探针组和GoFlag被子植物408探针组生成),并使用它们的重叠标记(目标外显子和侧翼区域的77个位点)来测试 的单系性,并使用55个含羞草类群加上两个外类群分类单元来研究Archidendron分支内的属间关系。我们表明 是单系的,确认了 与 的姐妹关系,并将这个合并的分支识别为Archidendron分支内的Serianthes分支。我们还评估了跨数据集使用重叠位点并结合一致性分析来测试属间关系,并进一步研究更广泛的含羞草类群中以前未解决的关系。一致性分析显示,在Archidendron分支末端附近基因树冲突有限,但在分支基部不一致性增加,这可能归因于快速的谱系分化(辐射)和/或不完全的谱系分选。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd5/9849021/c66fb1f29a0e/phytokeys-205-335_article-79144__-g001.jpg

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