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从加拿大分离出的菌株显示出中温菌株的广泛分布和聚类。

isolates from Canada demonstrate wide distribution and clustering among mesophilic strains.

机构信息

Institut de Biologie Intégrative et des Systèmes, Pavillon Charles-Eugène-Marchand, Université Laval, Quebec City, QC G1V 0A6, Canada.

Centre de Recherche de l'Institut Universitaire de Cardiologie et de Pneumologie de Québec, Hôpital Laval, Quebec City, QC G1V 4G5, Canada.

出版信息

Genome. 2023 May 1;66(5):108-115. doi: 10.1139/gen-2022-0086. Epub 2023 Feb 13.

Abstract

All the 36 known species to date of the genus are mesophilic except the species , which includes both psychrophilic and mesophilic subspecies. For 20 years, more and more mesophilic strains have been discovered. Only subsp. has officially been classified as a mesophilic subspecies. Most mesophiles have been isolated in hot countries. We present, for the first time, the characterization of two new mesophilic isolates from Quebec (Canada). Phenotypic and genomic characterizations were carried out on these strains, isolated from dead fish from a fish farm. Isolates 19-K304 and 19-K308 are clearly mesophiles, virulent to the amoeba , a surrogate host, and close to strain Y577, isolated in India. To our knowledge, this is the first time that mesophilic strains isolated from different countries are so similar. The major difference between the isolates is the presence of plasmid pY47-3, a cryptic plasmid that sometimes presents in mesophilic strains. More importantly, our extensive phylogenetic analysis reveals two well-defined clades of mesophilic strains with psychrophiles associated with one of these clades. This helps to have a better understanding of the evolution of this species and the apparition of psychrophilic subspecies.

摘要

迄今为止,已知属中的所有 36 个物种都是中温微生物,除了 ,它包括嗜冷和中温亚种。20 年来,越来越多的中温菌株被发现。只有 亚种被正式归类为中温亚种。大多数中温菌都在热带国家分离得到。我们首次从加拿大魁北克省描述了两个新的中温分离物。对这些从一个养鱼场的死鱼中分离出来的菌株进行了表型和基因组特征分析。分离株 19-K304 和 19-K308 显然是中温菌,对变形虫(一种替代宿主)具有毒力,与在印度分离的菌株 Y577 接近。据我们所知,这是首次发现来自不同国家的中温分离株如此相似。分离株之间的主要区别在于存在质粒 pY47-3,这是一种隐性质粒,有时存在于中温菌中。更重要的是,我们广泛的系统发育分析揭示了两个定义明确的中温菌株分支,与其中一个分支相关的是嗜冷菌。这有助于更好地理解该物种的进化和嗜冷亚种的出现。

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