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CM4 中介戊酰辅酶 A 水合酶的晶体结构

Crystal Structure of Mesaconyl-CoA Hydratase from CM4.

机构信息

Postech Biotech Center, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.

Center for Biomolecular Capture Technology, Bio Open Innovation Center, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.

出版信息

J Microbiol Biotechnol. 2023 Apr 28;33(4):485-492. doi: 10.4014/jmb.2212.12003. Epub 2023 Jan 26.

Abstract

, a facultative methylotroph, assimilates C compounds and accumulates poly-β-hydroxylbutyrate (PHB) as carbon and energy sources. The ethylmalonyl pathway is central to the carbon metabolism of , and is linked with a serine cycle and a PHB biosynthesis pathway. Understanding the ethylmalonyl pathway is vital in utilizing methylotrophs to produce value-added chemicals. In this study, we determined the crystal structure of the mesaconyl-CoA hydratase from (MeaC) that catalyzes the reversible conversion of mesaconyl-CoA to β-methylmalyl-CoA. The crystal structure of MeaC revealed that the enzyme belongs to the MaoC-like dehydratase domain superfamily and functions as a trimer. In our current MeaC structure, malic acid occupied the substrate binding site, which reveals how MeaC recognizes the β-methylmalyl-moiety of its substrate. The active site of the enzyme was further speculated by comparing its structure with those of other MaoC-like hydratases.

摘要

,一种兼性甲基营养菌,可同化 C 化合物并积累聚-β-羟基丁酸(PHB)作为碳源和能源。乙基丙二酰辅酶 A 途径是 的碳代谢中心,与丝氨酸循环和 PHB 生物合成途径相联系。了解乙基丙二酰辅酶 A 途径对于利用甲基营养菌生产高附加值化学品至关重要。在这项研究中,我们测定了 (MeaC)中丙二酰辅酶 A 水合酶的晶体结构,该酶催化丙二酰辅酶 A 可逆转化为 β-甲基丙二酰辅酶 A。MeaC 的晶体结构表明,该酶属于 MaoC 样脱水酶结构域超家族,以三聚体形式发挥作用。在我们目前的 MeaC 结构中,马来酸占据了底物结合位点,这揭示了 MeaC 如何识别其底物的 β-甲基丙二酰部分。通过比较其结构与其他 MaoC 样水合酶的结构,进一步推测了酶的活性位点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c23/10164722/791ec2475538/jmb-33-4-485-f1.jpg

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