Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.
Scientific Department, Army Medical Center, Rome, Italy.
PLoS One. 2023 Feb 16;18(2):e0277976. doi: 10.1371/journal.pone.0277976. eCollection 2023.
Neisseria meningitidis (meningococcus) is the causative agent of invasive meningococcal disease (IMD). Meningococcus of serogroup B (MenB) is one of the main serogroup causing IMD. MenB strains may be prevented by meningococcal B vaccines. In particular, vaccines with Factor H-binding protein (FHbp), classified into two subfamilies (A or B) or in three variants (v1, v2 or v3), are those available. The objective of the study was to investigate the phylogenetic relationships of FHbp subfamilies A and B (variants v1, v2 or v3) genes and proteins, together with their evolution patterns and selective pressure.
Overall, alignments of FHbp nucleotide and protein sequence from 155 MenB samples collected in different parts of Italy, from 2014 to 2017, were analyzed by ClustalW. JModeltest and the Smart Model Selection software were used for the statistical selection of the best-fit substitution models for nucleotide and protein alignments. Site-specific positive and negative selection were estimated through the HYPHY package. The phylogenetic signal was investigated with the likelihood mapping method. The Maximum Likelihood (ML) phylogenetic reconstructions were performed with Phyml.
The phylogenic analysis identified different clusters within the FHbp subfamily A and B variants, confirming sequence diversity. The pattern of selective pressure in our study indicated that subfamily B FHbp sequences are subjected to greater variations and positive selective pressure respect to subfamily A, with 16 positively supported selected sites identified.
The study pointed out the need for continued genomic surveillance for meningococci to monitor selective pressure and amino acidic changes. Monitoring the genetic diversity and molecular evolution of FHbp variants may be useful to investigate genetic diversity which may emerge over time.
脑膜炎奈瑟菌(脑膜炎球菌)是侵袭性脑膜炎奈瑟菌病(IMD)的病原体。B 群脑膜炎奈瑟菌(MenB)是引起 IMD 的主要血清群之一。脑膜炎球菌 B 型疫苗可预防 MenB 菌株。特别是具有因子 H 结合蛋白(FHbp)的疫苗,可分为两个亚家族(A 或 B)或分为三个变体(v1、v2 或 v3),这些都是可用的。本研究的目的是研究 FHbp 亚家族 A 和 B(变体 v1、v2 或 v3)基因和蛋白的系统发育关系,以及它们的进化模式和选择压力。
对 2014 年至 2017 年在意大利不同地区采集的 155 株 MenB 样本的 FHbp 核苷酸和蛋白质序列进行了 ClustalW 整体比对。使用 JModeltest 和 Smart Model Selection 软件对核苷酸和蛋白质比对的最佳替代模型进行了统计选择。通过 HYPHY 包估计了特定部位的阳性和阴性选择。采用似然映射法研究了系统发育信号。最大似然法(ML)系统发育重建由 Phyml 完成。
系统发育分析确定了 FHbp 亚家族 A 和 B 变体中的不同聚类,证实了序列多样性。本研究中的选择压力模式表明,与亚家族 A 相比,亚家族 B FHbp 序列受到更大的变异和正选择压力的影响,确定了 16 个正支持的选择位点。
本研究指出需要对脑膜炎球菌进行持续的基因组监测,以监测选择压力和氨基酸变化。监测 FHbp 变体的遗传多样性和分子进化可能有助于研究随时间出现的遗传多样性。