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植物对生物和非生物胁迫响应中的tRNA衍生小RNA

tRNA-derived small RNAs in plant response to biotic and abiotic stresses.

作者信息

Wang Chaojun, Chen Weiqiang, Aili Maimaiti, Zhu Lei, Chen Yan

机构信息

Institute of Education Science, Leshan Normal University, Leshan, China.

Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China.

出版信息

Front Plant Sci. 2023 Jan 30;14:1131977. doi: 10.3389/fpls.2023.1131977. eCollection 2023.

DOI:10.3389/fpls.2023.1131977
PMID:36798699
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9928184/
Abstract

tRNA-derived small RNAs (tsRNAs) represent a novel category of small non-coding RNAs and serve as a new regulator of gene expression at both transcriptional and post-transcriptional levels. Growing evidence indicates that tsRNAs can be induced by diverse stimuli and regulate stress-responsive target genes, allowing plants to adapt to unfavorable environments. Here, we discuss the latest developments about the biogenesis and classification of tsRNAs and highlight the expression regulation and potential function of tsRNAs in plant biotic and abiotic stress responses. Of note, we also collect useful bioinformatics tools and resources for tsRNAs study in plants. Finally, we propose current limitations and future directions for plant tsRNAs research. These recent discoveries have refined our understanding of whether and how tsRNAs enhance plant stress tolerance.

摘要

转运RNA衍生的小RNA(tsRNAs)代表了一类新型的小非编码RNA,并在转录和转录后水平上作为基因表达的新调节因子。越来越多的证据表明,tsRNAs可由多种刺激诱导产生,并调节应激反应靶基因,使植物能够适应不利环境。在此,我们讨论了tsRNAs生物合成和分类的最新进展,并强调了tsRNAs在植物生物和非生物胁迫反应中的表达调控及潜在功能。值得注意的是,我们还收集了用于植物tsRNAs研究的有用生物信息学工具和资源。最后,我们提出了植物tsRNAs研究当前的局限性和未来方向。这些最新发现完善了我们对tsRNAs是否以及如何增强植物胁迫耐受性的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9378/9928184/794d4b008126/fpls-14-1131977-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9378/9928184/794d4b008126/fpls-14-1131977-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9378/9928184/794d4b008126/fpls-14-1131977-g001.jpg

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本文引用的文献

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tRForest: a novel random forest-based algorithm for tRNA-derived fragment target prediction.tRForest:一种基于随机森林的新型tRNA衍生片段靶标预测算法。
NAR Genom Bioinform. 2022 May 30;4(2):lqac037. doi: 10.1093/nargab/lqac037. eCollection 2022 Jun.
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PtncRNAdb: plant transfer RNA-derived non-coding RNAs (tncRNAs) database.PtncRNAdb:植物转运RNA衍生的非编码RNA(tncRNAs)数据库。
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A tRNA-derived fragment from Chinese yew suppresses ovarian cancer growth via targeting .
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The Role of tRNA-Derived Small RNAs (tsRNAs) in Regulating Cell Death of Cardiovascular Diseases.转运RNA衍生的小RNA(tsRNAs)在调节心血管疾病细胞死亡中的作用
Biology (Basel). 2025 Feb 19;14(2):218. doi: 10.3390/biology14020218.
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Vitamin D-mediated tsRNA-07804 triggers mitochondrial dysfunction and suppresses non-small cell lung cancer progression by targeting CRKL.维生素 D 介导的 tsRNA-07804 通过靶向 CRKL 触发线粒体功能障碍并抑制非小细胞肺癌进展。
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BMC Plant Biol. 2022 Jan 3;22(1):3. doi: 10.1186/s12870-021-03393-9.
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A 5' tRNA-Ala-derived small RNA regulates anti-fungal defense in plants.一段 5' tRNA-Ala 衍生的小 RNA 调控植物的抗真菌防御。
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