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糖胺聚糖在粘蛋白型 O-糖基化中的分子识别。

Molecular Recognition of GalNAc in Mucin-Type O-Glycosylation.

机构信息

Institute of Biocomputation and Physics of Complex Systems (BIFI), Glycobiology Unit, University of Zaragoza, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, 50018 Zaragoza, Spain.

Department of Organic Chemistry, Faculty of Sciences, University of Zaragoza, Campus San Francisco, 50009 Zaragoza, Spain.

出版信息

Acc Chem Res. 2023 Mar 7;56(5):548-560. doi: 10.1021/acs.accounts.2c00723. Epub 2023 Feb 23.

Abstract

Acetylgalactosamine (GalNAc)-type O-glycosylation is an essential posttranslational modification (PTM) that plays fundamental roles in biology. Malfunction of this PTM is exemplified by the presence of truncated -glycans in cancer. For instance, the glycoprotein MUC1 is overexpressed in many tumor tissues and tends to carry simple oligosaccharides that allow for the presentation of different tumor-associated antigens, such as the Tn or sTn antigens (GalNAc-α-1-O-Thr/Ser and Neu5Acα2-6GalNAcα1-O-Ser/Thr, respectively). In other cases, such as tumoral calcinosis associated with O-glycosylation of the fibroblast growth factor 23, -glycans are absent or less abundant. Significant progress has been made in determining the three-dimensional structures of biomolecules that recognize GalNAc, such as antibodies, lectins, mucinases, GalNAc-transferases, and other glycosyltransferases. Analysis of the complexes between these entities and GalNAc-containing glycopeptides, in most cases derived from crystallographic or NMR analysis, provides an understanding of the key structural elements that control molecular recognition of these glycopeptides. Here, we describe and compare the binding sites of these proteins in detail, focusing on how the GalNAc moieties interact selectively with them. We also summarize the differences and similarities in GalNAc recognition. In general, the recognition of GalNAc-containing glycopeptides is determined by hydrogen bonds between hydroxyl groups and the -acetyl group of GalNAc with proteins, as well as CH-π contacts in which the hydrophobic α-face of the sugar and the methyl group of NHAc can be involved. The latter interaction usually provides the basis for selectivity. It is worth noting that binding of these glycopeptides depends primarily on recognition of the sugar moiety, with some exceptions such as a few anti-MUC1 antibodies that primarily recognize the peptide backbone and use the sugar to facilitate shape complementarity or to establish a limited number of interactions with the protein. Focusing specifically on the GalNAc moiety, we can observe that there is some degeneracy of interactions within the same protein families, likely due to substrate flexibility. However, when all studied proteins are considered together, despite the commonalities within each protein family, no pattern can be discerned between the different families, apart from the presence of common residues such as Tyr, His, or Asp, which are responsible for hydrogen bonds. The lack of a pattern can be anticipated, given the diverse functions of mucinases, glycosyltransferases, antibodies, and lectins. Finally, it is important to point out that the conformational differences observed in solution in glycopeptides bearing GalNAc-α-1-O-Ser or GalNAc-α-1-O-Thr also can be found in the bound state. This unique characteristic is exploited, for instance, by the enzyme C1GalT1 to broadly glycosylate both acceptor substrates. The findings summarized in this review may contribute to the rational structure-guided development of therapeutic vaccines, novel diagnostic tools for early cancer detection, and new cancer treatments for cancer with tailored anti-Tn or anti-STn antibodies or new drugs to inhibit GalNAc-T isoenzymes.

摘要

乙酰氨基半乳糖(GalNAc)型 O-糖基化是一种重要的翻译后修饰(PTM),在生物学中起着基础性作用。这种 PTM 的功能障碍表现在癌症中存在截断的 -聚糖。例如,糖蛋白 MUC1 在许多肿瘤组织中过度表达,并且往往携带简单的寡糖,这些寡糖允许呈现不同的肿瘤相关抗原,如 Tn 或 sTn 抗原(GalNAc-α-1-O-Thr/Ser 和 Neu5Acα2-6GalNAcα1-O-Ser/Thr,分别)。在其他情况下,例如与成纤维细胞生长因子 23 的 O-糖基化相关的肿瘤钙化,-聚糖不存在或较少。在确定识别 GalNAc 的生物分子的三维结构方面取得了重大进展,例如抗体、凝集素、粘蛋白酶、GalNAc-转移酶和其他糖基转移酶。这些实体与含有 GalNAc 的糖肽之间的复合物的分析,在大多数情况下来自晶体学或 NMR 分析,提供了对控制这些糖肽分子识别的关键结构元素的理解。在这里,我们详细描述和比较了这些蛋白质的结合位点,重点关注 GalNAc 部分如何选择性地与它们相互作用。我们还总结了 GalNAc 识别的差异和相似之处。一般来说,含有 GalNAc 的糖肽的识别由蛋白质与羟基和 GalNAc 的 -乙酰基之间的氢键以及糖的 CH-π 接触决定,其中糖的疏水性α面和 NHAc 的甲基可以参与。后一种相互作用通常为选择性提供基础。值得注意的是,这些糖肽的结合主要取决于糖部分的识别,除了少数抗-MUC1 抗体等少数例外,这些抗体主要识别肽骨架,并利用糖来促进形状互补或与蛋白质建立有限数量的相互作用。具体针对 GalNAc 部分,我们可以观察到同一蛋白质家族内的相互作用存在一定程度的简并性,可能是由于底物的灵活性。然而,当考虑所有研究的蛋白质时,尽管每个蛋白质家族都有共同点,但在不同家族之间,除了存在负责氢键的常见残基(如 Tyr、His 或 Asp)之外,无法看出任何模式。鉴于粘蛋白酶、糖基转移酶、抗体和凝集素的多样化功能,这种缺乏模式是可以预见的。最后,值得指出的是,在含有 GalNAc-α-1-O-Ser 或 GalNAc-α-1-O-Thr 的糖肽在溶液中观察到的构象差异也可以在结合状态下找到。这种独特的特性被 C1GalT1 等酶利用,以广泛糖基化两种接受体底物。本文总结的发现可能有助于合理指导基于结构的治疗性疫苗的开发、用于早期癌症检测的新型诊断工具,以及针对具有定制的抗-Tn 或抗-STn 抗体的癌症的新型癌症治疗方法,或用于抑制 GalNAc-T 同工酶的新药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a314/9996832/d916a0c3049a/ar2c00723_0001.jpg

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