壳斗科锥属的叶绿体全基因组序列
The complete chloroplast genome sequence of Hance (Fagaceae).
作者信息
Wang Ya-Feng, Huang Yong-Lin, He Rui-Jie, Yang Bing-Yuan, Liu Zhang-Bin
机构信息
Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guangxi Key Laboratory of Plant Functional Phytochemicals and Sustainable Utilization, Guangxi Institute of Botany, Guilin, China.
出版信息
Mitochondrial DNA B Resour. 2023 Feb 10;8(2):236-239. doi: 10.1080/23802359.2023.2167477. eCollection 2023.
Hance 1884 is a typical evergreen broad-leaved forest plant in the south subtropical and middle subtropical regions of China. It has high utilization value in wood production and soil erosion protection. Here, we first reported and characterized the complete chloroplast (cp) genome sequence of based on Illumina paired-end sequencing data. The complete cp genome sequence of was 160,853 base pairs (bp) in length which contained two inverted repeats (IRs) of 25,699 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 90,474 bp and 18,981 bp, respectively. The cpDNA contained 129 genes, comprising 85 protein-coding genes, 36 tRNA genes, 8 rRNA genes. The overall GC content of the plastome was 36.8%. Phylogenetic analysis base on 14 chloroplast genomes indicated that was closely related to the species and in Fagaceae.
1884年的石栎是中国南亚热带和中亚热带地区典型的常绿阔叶林植物。它在木材生产和土壤侵蚀防护方面具有很高的利用价值。在此，我们首次基于Illumina双端测序数据报道并表征了石栎的完整叶绿体（cp）基因组序列。石栎的完整cp基因组序列长度为160,853碱基对（bp），其中包含两个25,699 bp的反向重复序列（IRs），分别被90,474 bp的大单拷贝（LSC）和18,981 bp的小单拷贝（SSC）隔开。cpDNA包含129个基因，包括85个蛋白质编码基因、36个tRNA基因、8个rRNA基因。质体基因组的总体GC含量为36.8%。基于14个叶绿体基因组的系统发育分析表明，石栎与壳斗科的某些物种关系密切。
Zotero 插件