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豆科黄檀族基因的动态进化。

Dynamic Evolution of Genes in Dalbergioids.

机构信息

Evolutionary Biology Lab, Centre of Agricultural Biochemistry and Biotechnology (CABB), University of Agriculture, Faisalabad 38000, Pakistan.

Metabolomics Innovative Insitute, University of Alberta, Edmonton, AB T6G 2R3, Canada.

出版信息

Genes (Basel). 2023 Jan 31;14(2):377. doi: 10.3390/genes14020377.

DOI:10.3390/genes14020377
PMID:36833304
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9956324/
Abstract

is a large group within the family that consists of diverse plant species distributed in distinct biogeographic realms. Here, we have performed a comprehensive study to understand the evolution of the nucleotide-binding leucine-rich repeats (NLRs) gene family in . The evolution of gene families in this group is affected by a common whole genome duplication that occurred approximately 58 million years ago, followed by diploidization that often leads to contraction. Our study suggests that since diploidization, the NLRome of all groups of is expanding in a clade-specific manner with fewer exceptions. Phylogenetic analysis and classification of NLRs revealed that they belong to seven subgroups. Specific subgroups have expanded in a species-specific manner, leading to divergent evolution. Among the clade, the expansion of NLRome in six species of the genus was observed, with the exception of where a recent contraction of NLRome occurred. Similarly, members of the clade genus revealed a large-scale expansion in the diploid species. In addition, the asymmetric expansion of NLRome was observed in wild and domesticated tetraploids after recent duplications in the genus . Our analysis strongly suggests that whole genome duplication followed by tandem duplication after divergence from a common ancestor of is the major cause of NLRome expansion. To the best of our knowledge, this is the first ever study to provide insight toward the evolution of genes in this important tribe. In addition, accurate identification and characterization of genes is a substantial contribution to the repertoire of resistances among members of the species.

摘要

是一个大的家族,由分布在不同生物地理领域的多种植物物种组成。在这里,我们进行了一项全面的研究,以了解在 中的核苷酸结合富含亮氨酸重复(NLR)基因家族的进化。该组基因家族的进化受到大约 5800 万年前发生的一次全基因组复制的共同影响,随后是通常导致收缩的二倍化。我们的研究表明,自从二倍化以来,所有 组的 NLRome 以特定于分支的方式在扩张,例外情况较少。NLR 的系统发育分析和分类表明它们属于七个亚组。特定的亚组以物种特异性的方式扩张,导致分歧进化。在 分支中,观察到 属的六个物种的 NLRome 扩张,除了 属,其中最近 NLRome 发生了收缩。同样,在 属的二倍体物种中, 分支的成员显示出大规模扩张。此外,在 属中最近发生了加倍之后,观察到 NLRome 的不对称扩张。我们的分析强烈表明,全基因组复制后,在与 的共同祖先分化后发生串联复制,是 NLRome 扩张的主要原因。据我们所知,这是首次在该重要部落中提供有关 基因进化的研究。此外,准确鉴定和表征 基因是对 种成员抗性组合的重要贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/5c8f933a35a6/genes-14-00377-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/1f82527d18b8/genes-14-00377-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/9aece8cc9bcd/genes-14-00377-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/f1a448c84faa/genes-14-00377-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/ba4c91727c4c/genes-14-00377-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/5cdd690db0d7/genes-14-00377-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/5c8f933a35a6/genes-14-00377-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/1f82527d18b8/genes-14-00377-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/9aece8cc9bcd/genes-14-00377-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/f1a448c84faa/genes-14-00377-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/ba4c91727c4c/genes-14-00377-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/5cdd690db0d7/genes-14-00377-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aca7/9956324/5c8f933a35a6/genes-14-00377-g006.jpg

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