Department of Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia.
State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
Genes (Basel). 2023 Feb 14;14(2):489. doi: 10.3390/genes14020489.
Constitutive-heterochromatin placement in the genome affects chromosome structure by occupying centromeric areas and forming large blocks. To investigate the basis for heterochromatin variation in the genome, we chose a group of species with a conserved euchromatin part: the genus [stone marten ( 2n = 38), sable (, 2n = 38, pine marten ( 2n = 38), and yellow-throated marten (, 2n = 40)]. We mined the stone marten genome for the most abundant tandem repeats and selected the top 11 macrosatellite repetitive sequences. Fluorescent in situ hybridization revealed distributions of the tandemly repeated sequences (macrosatellites, telomeric repeats, and ribosomal DNA). We next characterized the AT/GC content of constitutive heterochromatin by CDAG (Chromomycin A3-DAPI-after G-banding). The euchromatin conservatism was shown by comparative chromosome painting with stone marten probes in newly built maps of the sable and pine marten. Thus, for the four species, we mapped three different types of tandemly repeated sequences critical for chromosome structure. Most macrosatellites are shared by the four species with individual patterns of amplification. Some macrosatellites are specific to a species, autosomes, or the X chromosome. The variation of core macrosatellites and their prevalence in a genome are responsible for the species-specific variation of the heterochromatic blocks.
组成型异染色质在基因组中的位置通过占据着丝粒区域并形成大的块来影响染色体结构。为了研究基因组中异染色质变异的基础,我们选择了一组具有保守常染色质部分的物种:石貂属(2n=38)、紫貂属(2n=38)、松貂属(2n=38)和黄喉貂(2n=40)。我们在石貂基因组中挖掘最丰富的串联重复序列,并选择了前 11 个大片段重复序列。荧光原位杂交揭示了串联重复序列(大片段重复、端粒重复和核糖体 DNA)的分布。接下来,我们通过 CDAG(Chromomycin A3-DAPI-after G-banding)对组成型异染色质的 AT/GC 含量进行了特征描述。通过石貂探针在新构建的紫貂和松貂图谱上进行的比较染色体杂交,显示了常染色质的保守性。因此,对于这四个物种,我们绘制了三种对染色体结构至关重要的不同类型的串联重复序列。大多数大片段重复序列在四个物种中共享,具有个体扩增模式。一些大片段重复序列是特定于一个物种、常染色体或 X 染色体的。核心大片段重复序列的变异及其在基因组中的普遍性是导致异染色质块特异性变异的原因。