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芝麻遗传改良中多组学方法的研究进展、应用及挑战

Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement.

机构信息

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.

Integrative Omics and Molecular Modeling Laboratory, Department of Bioinformatics and Biotechnology, Government College University Faisalabad (GCUF), Faisalabad 38000, Pakistan.

出版信息

Int J Mol Sci. 2023 Feb 4;24(4):3105. doi: 10.3390/ijms24043105.

Abstract

Sesame is one of the important traditional oil crops in the world, and has high economic and nutritional value. Recently, due to the novel high throughput sequencing techniques and bioinformatical methods, the study of the genomics, methylomics, transcriptomics, proteomics and metabonomics of sesame has developed rapidly. Thus far, the genomes of five sesame accessions have been released, including white and black seed sesame. The genome studies reveal the function and structure of the sesame genome, and facilitate the exploitation of molecular markers, the construction of genetic maps and the study of pan-genomes. Methylomics focus on the study of the molecular level changes under different environmental conditions. Transcriptomics provide a powerful tool to study abiotic/biotic stress, organ development, and noncoding RNAs, and proteomics and metabonomics also provide some support in studying abiotic stress and important traits. In addition, the opportunities and challenges of multi-omics in sesame genetics breeding were also described. This review summarizes the current research status of sesame from the perspectives of multi-omics and hopes to provide help for further in-depth research on sesame.

摘要

芝麻是世界上重要的传统油料作物之一,具有很高的经济价值和营养价值。近年来,由于新型高通量测序技术和生物信息学方法的发展,芝麻的基因组学、甲基组学、转录组学、蛋白质组学和代谢组学研究也迅速发展起来。迄今为止,已经有五个芝麻品种的基因组被公布,包括白芝麻和黑芝麻。基因组研究揭示了芝麻基因组的功能和结构,有助于开发分子标记、构建遗传图谱和研究泛基因组。甲基组学专注于研究不同环境条件下的分子水平变化。转录组学为研究非生物/生物胁迫、器官发育和非编码 RNA 提供了有力的工具,蛋白质组学和代谢组学也为研究非生物胁迫和重要性状提供了一些支持。此外,还描述了芝麻多组学遗传育种的机遇和挑战。本文从多组学的角度综述了芝麻的研究现状,希望为进一步深入研究芝麻提供帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e577/9965044/a3d2ac580890/ijms-24-03105-g001.jpg

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