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通过体外分泌组学分析筛选来自 的候选效应子。

Screening of Candidate Effectors from by In Vitro Secretomic Analysis.

机构信息

Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China.

Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230031, China.

出版信息

Int J Mol Sci. 2023 Feb 6;24(4):3189. doi: 10.3390/ijms24043189.

Abstract

is the causal agent of rice blast, one of the most serious diseases of rice worldwide. Secreted proteins play essential roles during a -rice interaction. Although much progress has been made in recent decades, it is still necessary to systematically explore -secreted proteins and to analyze their functions. This study employs a shotgun-based proteomic analysis to investigate the in vitro secretome of by spraying fungus conidia onto the PVDF membrane to mimic the early stages of infection, during which 3315 non-redundant secreted proteins were identified. Among these proteins, 9.6% (319) and 24.7% (818) are classified as classically or non-classically secreted proteins, while the remaining 1988 proteins (60.0%) are secreted through currently unknown secretory pathway. Functional characteristics analysis show that 257 (7.8%) and 90 (2.7%) secreted proteins are annotated as CAZymes and candidate effectors, respectively. Eighteen candidate effectors are selected for further experimental validation. All 18 genes encoding candidate effectors are significantly up- or down-regulated during the early infection process. Sixteen of the eighteen candidate effectors cause the suppression of BAX-mediated cell death in by using an -mediated transient expression assay, suggesting their involvement in pathogenicity related to secretion effectors. Our results provide high-quality experimental secretome data of and will expand our knowledge on the molecular mechanisms of pathogenesis.

摘要

稻瘟病菌是引起稻瘟病的病原菌,稻瘟病是全球范围内水稻最严重的病害之一。分泌蛋白在与水稻的互作过程中发挥着重要作用。尽管近几十年来取得了很大进展,但仍有必要系统地探索稻瘟病菌的分泌蛋白并分析其功能。本研究采用基于Shotgun 的蛋白质组学分析方法,通过向 PVDF 膜上喷洒真菌分生孢子来模拟感染的早期阶段,从而研究稻瘟病菌的体外分泌组。在该阶段共鉴定到 3315 个非冗余分泌蛋白。这些蛋白中,9.6%(319 个)和 24.7%(818 个)被归类为经典或非经典分泌蛋白,而其余 1988 个蛋白(60.0%)通过目前未知的分泌途径分泌。功能特征分析表明,257(7.8%)和 90(2.7%)个分泌蛋白分别被注释为 CAZymes 和候选效应子。选择了 18 个候选效应子进行进一步的实验验证。在早期感染过程中,所有编码候选效应子的 18 个基因都显著上调或下调。通过瞬时表达试验发现,18 个候选效应子中的 16 个可以抑制 BAX 介导的细胞死亡,这表明它们参与了与分泌效应子相关的致病性。我们的研究结果提供了高质量的稻瘟病菌实验分泌组数据,将扩展我们对稻瘟病菌致病分子机制的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74d6/9962664/c9d1beddd9c1/ijms-24-03189-g001.jpg

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