单细胞 RNA 测序揭示脂多糖诱导的急性肺炎症期间单核细胞衍生的间质巨噬细胞亚群的独特性。

Single-cell RNA sequencing reveals unique monocyte-derived interstitial macrophage subsets during lipopolysaccharide-induced acute lung inflammation.

机构信息

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States.

Department of Medicine, National Jewish Health, Denver, Colorado, United States.

出版信息

Am J Physiol Lung Cell Mol Physiol. 2023 Apr 1;324(4):L536-L549. doi: 10.1152/ajplung.00223.2022. Epub 2023 Feb 28.

Abstract

Interstitial macrophages (IMs) reside in the lung tissue surrounding key structures including airways, vessels, and alveoli. Recent work has described IM heterogeneity during homeostasis, however, there are limited data on IMs during inflammation. We sought to characterize IM origin, subsets, and transcriptomic profiles during homeostasis and lipopolysaccharide (LPS) induced acute lung inflammation. During homeostasis, we used three complementary methods, spectral flow cytometry, single-cell RNA-sequencing, and gene regulatory network enrichment, to demonstrate that IMs can be divided into two core subsets distinguished by surface and transcriptional expression of folate receptor β (/FRβ). These subsets inhabited distinct niches within the lung interstitium. Within FRβ IMs we identified a subpopulation marked by coexpression of LYVE1. During acute LPS-induced inflammation, lung IM numbers expand. Lineage tracing revealed IM expansion was due to recruitment of monocyte-derived IMs. At the peak of inflammation, recruited IMs were comprised two unique subsets defined by expression of genes associated with interferon signaling and glycolytic pathways. As recruited IMs matured, they adopted the overall transcriptional state of FRβ resident IMs but retained expression in several origin-specific genes, such as IL-1β. FRβ IMs were of near-pure resident origin. Taken together our data show that during LPS-induced inflammation, there are distinct populations of IMs that likely have unique functions. FRΒ IMs comprise a stable, resident population, whereas FRβ ΙΜs represent a mixed population of resident and recruited IMs.

摘要

间质巨噬细胞(IMs)位于肺组织中,围绕着气道、血管和肺泡等关键结构。最近的研究描述了 IM 在稳态时的异质性,但在炎症期间,IM 的数据有限。我们试图描述 IM 在稳态和脂多糖(LPS)诱导的急性肺炎症期间的起源、亚群和转录组特征。在稳态时,我们使用三种互补方法,即光谱流式细胞术、单细胞 RNA 测序和基因调控网络富集,证明 IM 可以分为两个核心亚群,其特征是叶酸受体β(/ FRβ)的表面和转录表达。这些亚群栖息在肺间质的不同龛位中。在 FRβ IM 中,我们发现了一个亚群,其特征是 LYVE1 的共表达。在急性 LPS 诱导的炎症期间,肺 IM 的数量增加。谱系追踪显示,IM 的扩增是由于单核细胞衍生的 IM 募集所致。在炎症高峰期,募集的 IM 由两个独特的亚群组成,这些亚群的特征是与干扰素信号和糖酵解途径相关的基因表达。随着募集的 IM 成熟,它们采用了 FRβ 驻留 IM 的总体转录状态,但保留了几个起源特异性基因的表达,如 IL-1β。FRβ IM 几乎全部来源于常驻细胞。总之,我们的数据表明,在 LPS 诱导的炎症期间,存在着不同的 IM 群体,它们可能具有独特的功能。FRβ IM 构成了一个稳定的常驻群体,而 FRβ IM 代表了常驻和募集的 IM 的混合群体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29fd/10069979/fb2fa6b2b1b4/l-00223-2022r01.jpg

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