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进化是由自然自动编码驱动的:重新定义物种、相互作用代码、合作和有性生殖。

Evolution is driven by natural autoencoding: reframing species, interaction codes, cooperation and sexual reproduction.

机构信息

Department of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot 76100, Israel.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

出版信息

Proc Biol Sci. 2023 Mar 8;290(1994):20222409. doi: 10.1098/rspb.2022.2409. Epub 2023 Mar 1.

Abstract

The continuity of life and its evolution, we proposed, emerge from an interactive group process manifested in networks of interaction. We term this process . Here, we reason that survival of the fitted results from a natural computational process we term . Natural autoencoding works by retaining repeating biological interactions while non-repeatable interactions disappear. (i) We define a species by its , which consists of a compact description of the repeating interactions of species organisms with their external and internal environments. Species interaction codes are descriptions recorded in the biological infrastructure that enables repeating interactions. Encoding and decoding are interwoven. (ii) Evolution proceeds by natural autoencoding of sustained changes in species interaction codes. DNA is only one element in natural autoencoding. (iii) Natural autoencoding accounts for the paradox of genome randomization in sexual reproduction-recombined genomes are analogous to the diversified inputs required for artificial autoencoding. The increase in entropy generated by genome randomization compensates for the decrease in entropy generated by organized life. (iv) Natural autoencoding and artificial autoencoding algorithms manifest defined similarities and differences. Recognition of the importance of fittedness could well serve the future of a humanly livable biosphere.

摘要

我们提出,生命的连续性及其进化源于网络相互作用中表现出的互动群过程。我们将这个过程称为。在这里,我们推断,适应性的生存源于我们称之为自然计算过程的结果。自然自动编码通过保留重复的生物相互作用而去除不可重复的相互作用来工作。(i)我们通过物种的来定义一个物种,物种由物种生物体与其外部和内部环境的重复相互作用的紧凑描述组成。物种相互作用代码是记录在生物基础设施中的可重复相互作用的描述。编码和解码交织在一起。(ii)进化是通过物种相互作用代码的持续变化的自然自动编码进行的。DNA 只是自然自动编码的一个要素。(iii)自然自动编码解释了有性生殖中基因组随机化的悖论——重组基因组类似于人工自动编码所需的多样化输入。基因组随机化产生的熵增加弥补了有组织生命产生的熵减少。(iv)自然自动编码和人工自动编码算法表现出明显的相似性和差异。认识到适应性的重要性很可能有助于人类可居住的生物圈的未来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3ae/9975652/ffb79cc5868a/rspb20222409f01.jpg

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