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特定蛋白质中的氨基酸取代与白念珠菌法尼醇不反应相关。

Amino acid substitutions in specific proteins correlate with farnesol unresponsiveness in Candida albicans.

机构信息

Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, Pavillon Paul-Comtois, 2425 rue de l'Agriculture, G1V 0A6, Quebec City, QC, Canada.

Institut de biologie intégrative et des systèmes, Université Laval, Quebec City, QC, Canada.

出版信息

BMC Genomics. 2023 Mar 1;24(1):93. doi: 10.1186/s12864-023-09174-y.

Abstract

BACKGROUND

The quorum-sensing molecule farnesol, in opportunistic yeast Candida albicans, modulates its dimorphic switch between yeast and hyphal forms, and biofilm formation. Although there is an increasing interest in farnesol as a potential antifungal drug, the molecular mechanism by which C. albicans responds to this molecule is still not fully understood.

RESULTS

A comparative genomic analysis between C. albicans strains that are naturally unresponsive to 30 µM of farnesol on TYE plates at 37 °C versus responsive strains uncovered new molecular determinants involved in the response to farnesol. While no signature gene was identified, amino acid changes in specific proteins were shown to correlate with the unresponsiveness to farnesol, particularly with substitutions in proteins known to be involved in the farnesol response. Although amino acid changes occur primarily in disordered regions of proteins, some amino acid changes were also found in known domains. Finally, the genomic investigation of intermediate-response strains showed that the non-response to farnesol occurs gradually following the successive accumulation of amino acid changes at specific positions.

CONCLUSION

It is known that large genomic changes, such as recombinations and gene flow (losses and gains), can cause major phenotypic changes in pathogens. However, it is still not well known or documented how more subtle changes, such as amino acid substitutions, play a role in the adaptation of pathogens. The present study shows that amino acid changes can modulate C. albicans yeast's response to farnesol. This study also improves our understanding of the network of proteins involved in the response to farnesol, and of the involvement of amino acid substitutions in cellular behavior.

摘要

背景

在机会性酵母白色念珠菌中,群体感应分子法呢醇调节其从酵母到菌丝形式的二态转换,以及生物膜形成。尽管人们对法呢醇作为潜在抗真菌药物越来越感兴趣,但白色念珠菌对这种分子的反应的分子机制仍未完全了解。

结果

在 37°C 的 TYE 平板上,与对 30µM 法呢醇无反应的天然白色念珠菌菌株相比,对法呢醇有反应的菌株之间的比较基因组分析揭示了参与法呢醇反应的新分子决定因素。虽然没有鉴定出特征基因,但特定蛋白质中的氨基酸变化与对法呢醇的无反应性相关,特别是与已知参与法呢醇反应的蛋白质中的取代相关。尽管氨基酸变化主要发生在蛋白质的无规卷曲区域,但也在已知结构域中发现了一些氨基酸变化。最后,对中间反应性菌株的基因组研究表明,随着特定位置的氨基酸变化的连续积累,对法呢醇的非反应性逐渐发生。

结论

已知,诸如重组和基因流(损失和增益)等大型基因组变化会导致病原体发生重大表型变化。然而,氨基酸取代等更细微的变化如何在病原体的适应中发挥作用,仍然知之甚少或没有记录。本研究表明,氨基酸变化可以调节白色念珠菌酵母对法呢醇的反应。本研究还提高了我们对涉及法呢醇反应的蛋白质网络的理解,以及氨基酸取代在细胞行为中的参与。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf0f/9979538/1adb45eefa3c/12864_2023_9174_Fig1_HTML.jpg

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