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鉴定和表达分析 C2H2-锌指蛋白基因揭示了它们在. 中的应激耐受中的作用。

Identification and expression analysis of C2H2-zinc finger protein genes reveals their role in stress tolerance in .

机构信息

Department of Agricultural Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.

出版信息

Genome. 2023 May 1;66(5):91-107. doi: 10.1139/gen-2022-0100. Epub 2023 Mar 2.

Abstract

C2H2-zinc finger (C2H2-ZF) genes are involved in various biological processes in plants including stress response; however, they lack characterization in . We identified 267 C2H2-ZF genes in and deciphered their physiological properties, subcellular localization, structure, synteny, and phylogeny and investigated the expression of 20 genes in response to different stresses and phytohormone treatments. The 267 genes were distributed on 19 chromosomes; phylogenetic analysis categorized them into five clades. They varied from 0.41 to 9.2 kb in length, had stress-responsive -acting elements in promoter regions, and their protein length varied from 9 to 1366 amino acids. About 42% of the genes had one exon, and 88% genes had orthologs in . About 97% of the genes were located in nucleus and 3% in cytoplasmic organelles. qRT-PCR analysis showed a different expression pattern of these genes in response to biotic stresses ( and ) and abiotic stresses (cold, drought, and salinity) and hormonal treatments. Differential expression of the same gene was observed under multiple stress conditions, and a few genes showed similar expression in response to more than one phytohormones. Our results suggest that the C2H2-ZF genes can be targeted for the improvement of stress tolerance in canola.

摘要

C2H2-锌指 (C2H2-ZF) 基因参与植物的各种生物学过程,包括应激反应;然而,它们在 中缺乏特征描述。我们在 中鉴定了 267 个 C2H2-ZF 基因,并破译了它们的生理特性、亚细胞定位、结构、同线性和系统发育,并研究了 20 个基因在响应不同胁迫和植物激素处理时的表达。这 267 个基因分布在 19 条染色体上;系统发育分析将它们分为五个分支。它们的长度从 0.41 到 9.2 kb 不等,在启动子区域具有应激反应的 -acting 元件,其蛋白质长度从 9 到 1366 个氨基酸不等。大约 42%的基因只有一个外显子,而 88%的基因在 中有直系同源物。大约 97%的基因位于核内,3%位于细胞质细胞器中。qRT-PCR 分析显示,这些基因在响应生物胁迫 (和 )和非生物胁迫 (冷、干旱和盐度) 和激素处理时表现出不同的表达模式。同一基因在多种胁迫条件下表现出差异表达,少数基因对一种以上的植物激素表现出相似的表达。我们的结果表明,C2H2-ZF 基因可以作为油菜耐胁迫改良的靶点。

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