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手性光学性质的 Z-DNA 使用离子卟啉和金属卟啉。

Chiroptical Properties of Z-DNA Using Ionic Porphyrins and Metalloporphyrins.

机构信息

Dipartimento di Scienze Chimiche, Università degli Studi di Catania, Catania, Italy.

出版信息

Methods Mol Biol. 2023;2651:131-141. doi: 10.1007/978-1-0716-3084-6_9.

DOI:10.1007/978-1-0716-3084-6_9
PMID:36892764
Abstract

The non-covalent interaction of achiral porphyrins with nucleic acids has been extensively studied, and various macrocycles have been indeed utilized as reporters of different sequences of DNA bases. Nevertheless, few studies have been published on the capability of these macrocycles to discriminate among the various nucleic acid conformations. Circular dichroism spectroscopy allowed to characterize the binding of several cationic and anionic mesoporphyrins and metallo derivatives with Z-DNA, in order to exploit the functionality of these systems as probes, storing system, and logic gate.

摘要

非手性卟啉与核酸的非共价相互作用已得到广泛研究,各种大环确实被用作不同 DNA 碱基序列的报告分子。然而,关于这些大环区分各种核酸构象的能力的研究很少。圆二色光谱允许表征几种阳离子和阴离子mesoporphyrins 和金属衍生物与 Z-DNA 的结合,以利用这些系统作为探针、存储系统和逻辑门的功能。

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1
Chiroptical Properties of Z-DNA Using Ionic Porphyrins and Metalloporphyrins.手性光学性质的 Z-DNA 使用离子卟啉和金属卟啉。
Methods Mol Biol. 2023;2651:131-141. doi: 10.1007/978-1-0716-3084-6_9.
2
Chiroptical properties of anionic and cationic porphyrins and metalloporphyrins in complex with left-handed Z-DNA and right-handed B-DNA.手性卟啉和金属卟啉与左手 Z-DNA 和右手 B-DNA 复合物的手性光学性质。
J Inorg Biochem. 2013 Oct;127:1-6. doi: 10.1016/j.jinorgbio.2013.05.018. Epub 2013 Jun 14.
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Binding Interactions of Zinc Cationic Porphyrin with Duplex DNA: From B-DNA to Z-DNA.锌卟啉阳离子与双链 DNA 的结合相互作用:从 B-DNA 到 Z-DNA。
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本文引用的文献

1
A novel porphyrin-based molecular probe ZnTCPPSpm4 with catalytic, stabilizing and chiroptical diagnostic power towards DNA B-Z transition.一种新型的基于卟啉的分子探针ZnTCPPSpm4,对DNA的B-Z转变具有催化、稳定和手性光学诊断能力。
J Inorg Biochem. 2017 Aug;173:141-143. doi: 10.1016/j.jinorgbio.2017.05.008. Epub 2017 May 14.
2
Chiroptical properties of anionic and cationic porphyrins and metalloporphyrins in complex with left-handed Z-DNA and right-handed B-DNA.手性卟啉和金属卟啉与左手 Z-DNA 和右手 B-DNA 复合物的手性光学性质。
J Inorg Biochem. 2013 Oct;127:1-6. doi: 10.1016/j.jinorgbio.2013.05.018. Epub 2013 Jun 14.
3
Recognition of left-handed Z-DNA of short unmodified oligonucleotides under physiological ionic strength conditions.
在生理离子强度条件下识别未修饰的短寡核苷酸的左手 Z-DNA。
Biochem Biophys Res Commun. 2010 Jun 25;397(2):329-32. doi: 10.1016/j.bbrc.2010.05.119. Epub 2010 May 27.
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Circular dichroism and conformational polymorphism of DNA.DNA的圆二色性与构象多态性
Nucleic Acids Res. 2009 Apr;37(6):1713-25. doi: 10.1093/nar/gkp026. Epub 2009 Feb 3.
5
Interactions of a tetraanionic porphyrin with DNA: from a Z-DNA sensor to a versatile supramolecular device.四价阴离子卟啉与DNA的相互作用:从Z-DNA传感器到多功能超分子装置
J Am Chem Soc. 2009 Feb 18;131(6):2046-7. doi: 10.1021/ja808099u.
6
Molecular mechanisms for the B-Z transition in the example of poly[d(G-C) x d(G-C)] polymers. A critical review.以聚[d(G-C)×d(G-C)]聚合物为例的B-Z转变的分子机制。一篇批判性综述。
Chem Rev. 2006 Jun;106(6):2045-64. doi: 10.1021/cr050243f.
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Induction and memory of chirality in porphyrin hetero-aggregates: the role of the central metal ion.卟啉杂聚集体中手性的诱导与记忆:中心金属离子的作用
Bioorg Med Chem. 2005 Sep 1;13(17):5159-63. doi: 10.1016/j.bmc.2005.05.035.
8
Evidence that vaccinia virulence factor E3L binds to Z-DNA in vivo: Implications for development of a therapy for poxvirus infection.痘苗病毒毒力因子E3L在体内与Z-DNA结合的证据:对痘病毒感染治疗方法开发的启示。
Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1514-8. doi: 10.1073/pnas.0308260100. Epub 2004 Feb 2.
9
Timeline: Z-DNA: the long road to biological function.时间线:Z-DNA:通往生物学功能的漫长道路。
Nat Rev Genet. 2003 Jul;4(7):566-72. doi: 10.1038/nrg1115.
10
The zab domain of the human RNA editing enzyme ADAR1 recognizes Z-DNA when surrounded by B-DNA.当被B型DNA包围时,人类RNA编辑酶ADAR1的zab结构域可识别Z型DNA。
J Biol Chem. 2000 Sep 1;275(35):26828-33. doi: 10.1074/jbc.M003477200.